Gene detail

Detailed information of evm.model.Ap12.2210 in Astrangia poculata

Genomic Location: Ap12:23253766...23265894
NR annotation: XP_020605706.1, low-density lipoprotein receptor-related protein 6-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap12.2210

atggaagttttgcctcagcttcttatcactctgctagctctgtgcattactccatcggcctactctcagaggttgttatacgccaatcgaaaagatataagaatctttgggacgagcggccaggaccagaatgaaactatagtagtggatggccttaaagatgccatttctgtggatttctcctttgcggaaggatttgtgttttggaccgatgctagcttgaagaaaatcaagcgaattcgtgtcacagtagaaacaaaaaaagtcgaggatgtgatctctgtgggtttgaggaaacctgagggattggctgtagactggatagcgaaaaagttgtattggactgacagtcaaggttttgactgggaaacgagtaaaattgaagttgcaaattttgatggatcttatcgaaaagttcttttctggaaagacgtgggacttccaagggctattgccgtggatccaatcaaaggtgtcgtgttctggacggactggggtgataaacccaaagtagagagagctgaaatggatggctccaatcgtcaagctatcatccgacaggacatccaatggcccaatgggctgacaatagactacagtacagagaaaatatactggattgatgcaaaattgtattacatagctaaagctaattatgacggttcaaaccgtcataagatattcaaaactcctatgcccagtcaatgtgtattgggtcatccatttgctatgacattatatgagaacaaaatttactggactgattcgaaaaccaaaggcatttactctatggacaagaatactggtacagggtgtcaaaaggtttggtcaaatgcttattctccaatggatatccacccatttgagccgaaaagacagcttccgagaactggtcaaaacccctgtaattccaccaccaatggaggatgcagccgtctgtgtttgttgaatgctcgtggtcactcgtgtgcatgcccaactggtgtgaagcttttgtctgatggaaaaacgtgtgagcaaggtcctgtgcaattcttattgcttgcaaggatggaggatctgggccgcatatcgctcgacacacctaatcttactgatgtagttgtgccagtttctggtatcaaacatgctgttgccattgattttgatccagttgataaatttgtgtattggagcgatgacgtgaaacgtgaaataaagagatgccgaatgaatggatccgatgacgaggtcatagtttcaagtgaagttaaacatcccgatggtatcgcagttgactgggtggcgcggaacttatactggacagatacaggcactgatagaattgaagtcagcaggctgaatggctcgtcaagaaaagttcttattagtgaaaatctcgatgaacctagagcgattgtattggatccaactcgtgggtacatgtactggactgactggggaatccatccaaagattgaacgagcaggacttgatggaagtcaccgcattgccttggtcaacacatctgttgtgtggccaaacagtctcaccattgattaccttgatcgcacaatctactgggctgacgccaacttggacaagatagaggtcatgaacttggatgggagtaatcgcagagtagttctggatcgaaaactgccacacatcgttagtgttactgttcttggtgatcggttatattgggctgactggcataaaagggctatagagagtgtggacaagaaaacccgcaatgacagacaaatcatcattgacggtctgcctgatttgatgggattaaaagctttcaatcttagccttacttatggttctaatccctgccagcataacaatggaggttgtagtcatctgtgtttatacaggccttcaggagttaaatgcgaatgcccaacagggatggagctgcttgctgacaagaaaagttgtttccttgacagaaaagatccaataaagtgcagatgtgaccgttgtgtgaaaacaaactacacttgcaacaccatcaaaggagcatgtattgtgtacattcatcgcgaagagaatggtgatattaaacaaaccaggagttgtacccctgagcacattgtagccatacttttatgtcgaggctatgatggagacccaaaccaagatgcatactgctgtaacaaggatatgtgcaatactgttgataagattaatcttactttaccaactgtgagtcctttcacctctcatcgtactagtaaaggttcttcccttactacgggtaaaaagccaggacttaatcaaaccattatttatgtgtctgcatcgattggaatcctgctccacgaattcaagtaccatgttttcataatatacaaccaagaggattcccattgggtgagccgcacactccttccgttacttgaagagaagcatcatttaaagttctgcattcagtacagggactttacacctggaaagcctttctcagagagcatggcggaaagtgtctacaacagctacaaaatcatagcagtgttattaaacaattttttgaagagtaactactgtagctacgaactcaacatcgcaaaataccgacttctaaacaggcgagacaacagtctggttattataaggatcgataaagaatcggattgctgcaagcttgcacgagagctaagaaaaaggaatttcatcgattattctaactcactggaaaggccactgtgggaaagcctagattatgcttag

Transcript

evm.model.Ap12.2210

ATGGAAGTTTTGCCTCAGCTTCTTATCACTCTGCTAGCTCTGTGCATTACTCCATCGGCCTACTCTCAGAGGTTGTTATACGCCAATCGAAAAGATATAAGAATCTTTGGGACGAGCGGCCAGGACCAGAATGAAACTATAGTAGTGGATGGCCTTAAAGATGCCATTTCTGTGGATTTCTCCTTTGCGGAAGGATTTGTGTTTTGGACCGATGCTAGCTTGAAGAAAATCAAGCGAATTCGTGTCACAGTAGAAACAAAAAAAGTCGAGGATGTGATCTCTGTGGGTTTGAGGAAACCTGAGGGATTGGCTGTAGACTGGATAGCGAAAAAGTTGTATTGGACTGACAGTCAAGGTTTTGACTGGGAAACGAGTAAAATTGAAGTTGCAAATTTTGATGGATCTTATCGAAAAGTTCTTTTCTGGAAAGACGTGGGACTTCCAAGGGCTATTGCCGTGGATCCAATCAAAGGTGTCGTGTTCTGGACGGACTGGGGTGATAAACCCAAAGTAGAGAGAGCTGAAATGGATGGCTCCAATCGTCAAGCTATCATCCGACAGGACATCCAATGGCCCAATGGGCTGACAATAGACTACAGTACAGAGAAAATATACTGGATTGATGCAAAATTGTATTACATAGCTAAAGCTAATTATGACGGTTCAAACCGTCATAAGATATTCAAAACTCCTATGCCCAGTCAATGTGTATTGGGTCATCCATTTGCTATGACATTATATGAGAACAAAATTTACTGGACTGATTCGAAAACCAAAGGCATTTACTCTATGGACAAGAATACTGGTACAGGGTGTCAAAAGGTTTGGTCAAATGCTTATTCTCCAATGGATATCCACCCATTTGAGCCGAAAAGACAGCTTCCGAGAACTGGTCAAAACCCCTGTAATTCCACCACCAATGGAGGATGCAGCCGTCTGTGTTTGTTGAATGCTCGTGGTCACTCGTGTGCATGCCCAACTGGTGTGAAGCTTTTGTCTGATGGAAAAACGTGTGAGCAAGGTCCTGTGCAATTCTTATTGCTTGCAAGGATGGAGGATCTGGGCCGCATATCGCTCGACACACCTAATCTTACTGATGTAGTTGTGCCAGTTTCTGGTATCAAACATGCTGTTGCCATTGATTTTGATCCAGTTGATAAATTTGTGTATTGGAGCGATGACGTGAAACGTGAAATAAAGAGATGCCGAATGAATGGATCCGATGACGAGGTCATAGTTTCAAGTGAAGTTAAACATCCCGATGGTATCGCAGTTGACTGGGTGGCGCGGAACTTATACTGGACAGATACAGGCACTGATAGAATTGAAGTCAGCAGGCTGAATGGCTCGTCAAGAAAAGTTCTTATTAGTGAAAATCTCGATGAACCTAGAGCGATTGTATTGGATCCAACTCGTGGGTACATGTACTGGACTGACTGGGGAATCCATCCAAAGATTGAACGAGCAGGACTTGATGGAAGTCACCGCATTGCCTTGGTCAACACATCTGTTGTGTGGCCAAACAGTCTCACCATTGATTACCTTGATCGCACAATCTACTGGGCTGACGCCAACTTGGACAAGATAGAGGTCATGAACTTGGATGGGAGTAATCGCAGAGTAGTTCTGGATCGAAAACTGCCACACATCGTTAGTGTTACTGTTCTTGGTGATCGGTTATATTGGGCTGACTGGCATAAAAGGGCTATAGAGAGTGTGGACAAGAAAACCCGCAATGACAGACAAATCATCATTGACGGTCTGCCTGATTTGATGGGATTAAAAGCTTTCAATCTTAGCCTTACTTATGGTTCTAATCCCTGCCAGCATAACAATGGAGGTTGTAGTCATCTGTGTTTATACAGGCCTTCAGGAGTTAAATGCGAATGCCCAACAGGGATGGAGCTGCTTGCTGACAAGAAAAGTTGTTTCCTTGACAGAAAAGATCCAATAAAGTGCAGATGTGACCGTTGTGTGAAAACAAACTACACTTGCAACACCATCAAAGGAGCATGTATTGTGTACATTCATCGCGAAGAGAATGGTGATATTAAACAAACCAGGAGTTGTACCCCTGAGCACATTGTAGCCATACTTTTATGTCGAGGCTATGATGGAGACCCAAACCAAGATGCATACTGCTGTAACAAGGATATGTGCAATACTGTTGATAAGATTAATCTTACTTTACCAACTGTGAGTCCTTTCACCTCTCATCGTACTAGTAAAGGTTCTTCCCTTACTACGGGTAAAAAGCCAGGACTTAATCAAACCATTATTTATGTGTCTGCATCGATTGGAATCCTGCTCCACGAATTCAAGTACCATGTTTTCATAATATACAACCAAGAGGATTCCCATTGGGTGAGCCGCACACTCCTTCCGTTACTTGAAGAGAAGCATCATTTAAAGTTCTGCATTCAGTACAGGGACTTTACACCTGGAAAGCCTTTCTCAGAGAGCATGGCGGAAAGTGTCTACAACAGCTACAAAATCATAGCAGTGTTATTAAACAATTTTTTGAAGAGTAACTACTGTAGCTACGAACTCAACATCGCAAAATACCGACTTCTAAACAGGCGAGACAACAGTCTGGTTATTATAAGGATCGATAAAGAATCGGATTGCTGCAAGCTTGCACGAGAGCTAAGAAAAAGGAATTTCATCGATTATTCTAACTCACTGGAAAGGCCACTGTGGGAAAGCCTAGATTATGCTTAG

Protein

Uniprot

Uniprot term	Description
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03068	LRP5_6; low density lipoprotein receptor-related protein 5/6	-	Membrane trafficking	ko04131	deepkoala