Gene detail

Detailed information of evm.model.Ap12.643 in Astrangia poculata

Genomic Location: Ap12:7200091...7214108
NR annotation: XP_020632933.1, ADP-ribosylation factor-binding protein GGA2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap12.643

aaagccacggatccatcgaaaagcaaggaaggtgtggattacgtgactccagtatgcgacagagtaaatctggacctggacggtccactgatcgggatccgttatatggcgaccaaagtcaaaagcgctaaagaggaagaggctatacttggacttaatcttattgaagcatgtgtgaaaaactgtggccagcgatttcacactgaagttggaaaatacagatttttgaatgagcttattaaattgatatcatcaaagtatgatggagactggacaccagatgcagtaaagagacgcattattcagtgtatgtacagctggactcttggtttaccaaaagagaccaaagtcgcagaggcttataaaatgctcaaacagcaaggtattgtgacaaatgaccctcaggacccatatgctaaaccctcagaggaaaatccatcaacagaaaaatcaaaagatacaatatttcaggatgaagaaaaatcaaagcttctcgcacgccttctgaagagttctcatccagaagatttacaagctgcaaacagactgataaagacaatggttagacaggatgaaatgaagatggagagactagtaaaaagaaacacagaaatagatacttgctgtaacaacatcaagctgctaacagagatgctgaaccactacagccctagctctcctcctcaggataaggaactgatgaaggaactttatgatgcctgtgacaggatgagacctcagttgtttagactggccagctcagccacagaagatggcgatgaaggacttgctgatattctcagggtgaatgatgacttatcaagagtcttagagtattacaggcggatttttggactggcccccctgtcaacaacaactgctacaactggtccagccttgcctccaacaacccagacaacagcttctgaggctggtgctgtagccggtgcttccactcttattgatctaggaggctctgctggtcatcagggtgaatcaacagaagcaccagtctcaagtgttttagaaaatgaactcaaagctctgggtcttcatgacattgaagcacctcctgcaaccagtaattcccagataccattgcagcaggttgcccagcagcctggtcttgtagggccatgggctggaccagcccagaactttggcatgcttccacctaatgcatcctccacagtgggtgtggtcagaccaatgggtcagcaacaggtagcaggcatgatgccccctgtgtacatgggagtaggacaaatgcaacgaatgcccttccaagccatgagtcctggagcaatgtcaatggcgctcagaccaggtccagtgagtatgggtacaagcagccttggcatgccaactactgggtcatttcctcgcgggaatcttccagcagcagggaacaggagggcaggagaggaggcaagagcacctaatgcgcttgacttgctgggtcaggaagtactgcagacccagaaacagcagcagaagcagaaacaaactgtcactccactacaagagaaagctgcaccagaacaacagcaggcatcggcgtcaacagctgacagcttgttatcattaggattggagcccaccccggcaactcttcctgctggttctccttcacctgcaagctttcctcctgtagcatcacctcccaagccaaccgcacctctgtctctggataacgtttttgtgcctttagatactattacaccaggtagtcatccaccactaacagttctcgataaaaacagcatcaaaataacttttcactttgctaagacaagtgcagagctgtctagagatgacttgtcggttgttgtgatctccaccatgagttcactgtcttctgcagttaaaaactttgtctttcaagctgcagtacctaagacaatgagagtaaaacttcaacctccgtctggttgtgagttgccgccgtataatccaattcttcctccctccgccattacacaagtcatgctgattgccaatccagctaaggaaaagatcagattaaaatacaaaataagctaccaagttgatggttcctccacgacagaaactggcgaagtggacagttttccctgtgctctgcaaggataa

Transcript

evm.model.Ap12.643

ATAAAGCCACGGATCCATCGAAAAGCAAGGAAGGTGTGGATTACGTGACTCCAGTATGCGACAGAGTAAATCTGGACCTGGACGGTCCACTGATCGGGATCCGTTATATGGCGACCAAAGTCAAAAGCGCTAAAGAGGAAGAGGCTATACTTGGACTTAATCTTATTGAAGCATGTGTGAAAAACTGTGGCCAGCGATTTCACACTGAAGTTGGAAAATACAGATTTTTGAATGAGCTTATTAAATTGATATCATCAAAGTATGATGGAGACTGGACACCAGATGCAGTAAAGAGACGCATTATTCAGTGTATGTACAGCTGGACTCTTGGTTTACCAAAAGAGACCAAAGTCGCAGAGGCTTATAAAATGCTCAAACAGCAAGGTATTGTGACAAATGACCCTCAGGACCCATATGCTAAACCCTCAGAGGAAAATCCATCAACAGAAAAATCAAAAGATACAATATTTCAGGATGAAGAAAAATCAAAGCTTCTCGCACGCCTTCTGAAGAGTTCTCATCCAGAAGATTTACAAGCTGCAAACAGACTGATAAAGACAATGGTTAGACAGGATGAAATGAAGATGGAGAGACTAGTAAAAAGAAACACAGAAATAGATACTTGCTGTAACAACATCAAGCTGCTAACAGAGATGCTGAACCACTACAGCCCTAGCTCTCCTCCTCAGGATAAGGAACTGATGAAGGAACTTTATGATGCCTGTGACAGGATGAGACCTCAGTTGTTTAGACTGGCCAGCTCAGCCACAGAAGATGGCGATGAAGGACTTGCTGATATTCTCAGGGTGAATGATGACTTATCAAGAGTCTTAGAGTATTACAGGCGGATTTTTGGACTGGCCCCCCTGTCAACAACAACTGCTACAACTGGTCCAGCCTTGCCTCCAACAACCCAGACAACAGCTTCTGAGGCTGGTGCTGTAGCCGGTGCTTCCACTCTTATTGATCTAGGAGGCTCTGCTGGTCATCAGGGTGAATCAACAGAAGCACCAGTCTCAAGTGTTTTAGAAAATGAACTCAAAGCTCTGGGTCTTCATGACATTGAAGCACCTCCTGCAACCAGTAATTCCCAGATACCATTGCAGCAGGTTGCCCAGCAGCCTGGTCTTGTAGGGCCATGGGCTGGACCAGCCCAGAACTTTGGCATGCTTCCACCTAATGCATCCTCCACAGTGGGTGTGGTCAGACCAATGGGTCAGCAACAGGTAGCAGGCATGATGCCCCCTGTGTACATGGGAGTAGGACAAATGCAACGAATGCCCTTCCAAGCCATGAGTCCTGGAGCAATGTCAATGGCGCTCAGACCAGGTCCAGTGAGTATGGGTACAAGCAGCCTTGGCATGCCAACTACTGGGTCATTTCCTCGCGGGAATCTTCCAGCAGCAGGGAACAGGAGGGCAGGAGAGGAGGCAAGAGCACCTAATGCGCTTGACTTGCTGGGTCAGGAAGTACTGCAGACCCAGAAACAGCAGCAGAAGCAGAAACAAACTGTCACTCCACTACAAGAGAAAGCTGCACCAGAACAACAGCAGGCATCGGCGTCAACAGCTGACAGCTTGTTATCATTAGGATTGGAGCCCACCCCGGCAACTCTTCCTGCTGGTTCTCCTTCACCTGCAAGCTTTCCTCCTGTAGCATCACCTCCCAAGCCAACCGCACCTCTGTCTCTGGATAACGTTTTTGTGCCTTTAGATACTATTACACCAGGTAGTCATCCACCACTAACAGTTCTCGATAAAAACAGCATCAAAATAACTTTTCACTTTGCTAAGACAAGTGCAGAGCTGTCTAGAGATGACTTGTCGGTTGTTGTGATCTCCACCATGAGTTCACTGTCTTCTGCAGTTAAAAACTTTGTCTTTCAAGCTGCAGTACCTAAGACAATGAGAGTAAAACTTCAACCTCCGTCTGGTTGTGAGTTGCCGCCGTATAATCCAATTCTTCCTCCCTCCGCCATTACACAAGTCATGCTGATTGCCAATCCAGCTAAGGAAAAGATCAGATTAAAATACAAAATAAGCTACCAAGTTGATGGTTCCTCCACGACAGAAACTGGCGAAGTGGACAGTTTTCCCTGTGCTCTGCAAGGATAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q8R0H9	ADP-ribosylation factor-binding protein GGA1 OS=Mus musculus OX=10090 GN=Gga1 PE=1 SV=1
A0A0G2JV04	ADP-ribosylation factor-binding protein GGA3 OS=Rattus norvegicus OX=10116 GN=Gga3 PE=1 SV=1
Q9NZ52	ADP-ribosylation factor-binding protein GGA3 OS=Homo sapiens OX=9606 GN=GGA3 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|GAT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02883	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF18308	GGA_N-GAT	N-terminal extension of GAT domain	Family	Interproscan
PF00790	VHS	VHS domain	Repeat	Interproscan
PF03127	GAT	GAT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008152	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR002014	Domain	VHS domain	Interproscan
IPR004152	Domain	GAT domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR027422	Family	ADP-ribosylation factor-binding protein GGA1-3	Interproscan
IPR041198	Domain	N-terminal extension of GAT domain	Interproscan
IPR038425	Homologous_superfamily	GAT domain superfamily	Interproscan
IPR008153	Domain	Gamma-adaptin ear (GAE) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45905	GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005802	Cellular Component	trans-Golgi network	Interproscan
GO:0006893	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0034394	Biological Process	protein localization to cell surface	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12404	GGA; ADP-ribosylation factor-binding protein GGA	-	Membrane trafficking	ko04131	deepkoala