Gene detail

Detailed information of evm.model.Ap13.104 in Astrangia poculata

Genomic Location: Ap13:1119518...1143817
NR annotation: XP_022803081.1, coadhesin-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap13.104

aataatgtctgggctttatgccccgacggttatttcttgaatggctttaggaaatcagatggacaagatttgtctaacattgaagaaggaaagtgttgccgtccgcagaatcaaccggaagatagttatgacgactgctacgataaagacgtagaattcgacgactggggttgggggggttgcgaggactcaaccatattacatgaccggccatattattacatgaccggcttctacaaaagcacctgcgatgaaattaactgcattggaaaaatcaaatgctgcagcatgaaaagagatggcagatggagtgacttcggaaactggaccgagtgcagtgtgacttgtggaaatggacagcaagaacgcacgcgaacctgcaccaatccccctccgtcgaataatggagcagaatgtactggatccaacaaggagaccaaaccatgtaataacggcccatgccctgtggatggtggatggagcgactttggagactggagcgagtgcagtgtgacgtgtgaaggcggaataaaggaacgcagaagaacctgtaccaatccccctccgtcaaattgtggcgcgtattgtgttggagacaacgtggaggcacaaagctgcaacgctcagtcttgcagcgttgatggtggttggactaactggtcggcgtacggcgagtgtagcaagacctgtggtaaagggaagaaatataaaacccgtacctgcaccaacccacccccctcaggagacgggaagaactgtaagggaaaatccaagagaggcaagagatgtaacgagggaaaatgccctaaagctcccccaacaacatgcatggaacatgaatggatgtgcaaggacaaaatgaggtgcattttacaaacaaagctttgtgatggggaagctgattgcgctgacaaaagtgatgaaaactgtgttttcagttttaacgacaagctttataaacaaatcgacggatgcggcatgggcaacccactatctccagtccttgctaacattttcatggccaaactagaagctgatgtagtccgacctttcaacccaccattctatgatcgatatgttgatgattgtttctctaagaagaaaaagagcgagcctgatgctctacttgaacgcctaaatcgctaccaccctaacattgttttcactgtcgaagaaaatcccgaccactttcttgatactgcctttagttacaccaacaagttcaattgcagcgtctttaagaaaccggggaaattaccaacacattggaaatctgaggtccctaccaagtggaaaaggaattgcatcactggcgcactccatagagccaaacgaatctccaccgattttgagaaggacattaaaactttagaaacttctttcatcaaagcaggttatccgaaacgttttatctcgcatacaatcaacaacttcctaaccgactcatcacaagacgacaacatcattccagattttctcttcgaagaacgagattgttcttgtggcgttgactacattggcgagactgtgcgaaacttagaagtgcgaattgcggaacattcaaatcctgctcacacctctgaacctgcaaaacacctgcgggaaaacccatcacattctttcacctggcgtgttctctcttcagcacagacattccacaagcgtagaatcgttgagggtctaatgatccaacaattccgccccactgctgtcgatggcggatggagtgactttggaaactggagcgagtgcagtgtgacttgtggagatggacagcaggaacgctcgctggacggtggctggagtaactttggagactggagcgagtgcagtgtgacgtgtggaggcggaataaaggaacgcagaagaacctgtaccagtcctcctccgtcaaatggtggcgcgtgttttgttggagacaacgtggaggcagaacgctgcaacactgaatcttgtgaagaggaaatagtttatggtgggtggagtgactggtcgcaatacggcgagtgcaaaaaccagaagggctgtggtaaggggaggaaaactcgtacccgtacctgcactaacccacccccctcaggaggtggaaggaactgcaagggaaaacccaaacagtcgaagaaatgtagacttgtgtcatgcaaaggtatggagaattga

Transcript

evm.model.Ap13.104

GAATAATGTCTGGGCTTTATGCCCCGACGGTTATTTCTTGAATGGCTTTAGGAAATCAGATGGACAAGATTTGTCTAACATTGAAGAAGGAAAGTGTTGCCGTCCGCAGAATCAACCGGAAGATAGTTATGACGACTGCTACGATAAAGACGTAGAATTCGACGACTGGGGTTGGGGGGGTTGCGAGGACTCAACCATATTACATGACCGGCCATATTATTACATGACCGGCTTCTACAAAAGCACCTGCGATGAAATTAACTGCATTGGAAAAATCAAATGCTGCAGCATGAAAAGAGATGGCAGATGGAGTGACTTCGGAAACTGGACCGAGTGCAGTGTGACTTGTGGAAATGGACAGCAAGAACGCACGCGAACCTGCACCAATCCCCCTCCGTCGAATAATGGAGCAGAATGTACTGGATCCAACAAGGAGACCAAACCATGTAATAACGGCCCATGCCCTGTGGATGGTGGATGGAGCGACTTTGGAGACTGGAGCGAGTGCAGTGTGACGTGTGAAGGCGGAATAAAGGAACGCAGAAGAACCTGTACCAATCCCCCTCCGTCAAATTGTGGCGCGTATTGTGTTGGAGACAACGTGGAGGCACAAAGCTGCAACGCTCAGTCTTGCAGCGTTGATGGTGGTTGGACTAACTGGTCGGCGTACGGCGAGTGTAGCAAGACCTGTGGTAAAGGGAAGAAATATAAAACCCGTACCTGCACCAACCCACCCCCCTCAGGAGACGGGAAGAACTGTAAGGGAAAATCCAAGAGAGGCAAGAGATGTAACGAGGGAAAATGCCCTAAAGCTCCCCCAACAACATGCATGGAACATGAATGGATGTGCAAGGACAAAATGAGGTGCATTTTACAAACAAAGCTTTGTGATGGGGAAGCTGATTGCGCTGACAAAAGTGATGAAAACTGTGTTTTCAGTTTTAACGACAAGCTTTATAAACAAATCGACGGATGCGGCATGGGCAACCCACTATCTCCAGTCCTTGCTAACATTTTCATGGCCAAACTAGAAGCTGATGTAGTCCGACCTTTCAACCCACCATTCTATGATCGATATGTTGATGATTGTTTCTCTAAGAAGAAAAAGAGCGAGCCTGATGCTCTACTTGAACGCCTAAATCGCTACCACCCTAACATTGTTTTCACTGTCGAAGAAAATCCCGACCACTTTCTTGATACTGCCTTTAGTTACACCAACAAGTTCAATTGCAGCGTCTTTAAGAAACCGGGGAAATTACCAACACATTGGAAATCTGAGGTCCCTACCAAGTGGAAAAGGAATTGCATCACTGGCGCACTCCATAGAGCCAAACGAATCTCCACCGATTTTGAGAAGGACATTAAAACTTTAGAAACTTCTTTCATCAAAGCAGGTTATCCGAAACGTTTTATCTCGCATACAATCAACAACTTCCTAACCGACTCATCACAAGACGACAACATCATTCCAGATTTTCTCTTCGAAGAACGAGATTGTTCTTGTGGCGTTGACTACATTGGCGAGACTGTGCGAAACTTAGAAGTGCGAATTGCGGAACATTCAAATCCTGCTCACACCTCTGAACCTGCAAAACACCTGCGGGAAAACCCATCACATTCTTTCACCTGGCGTGTTCTCTCTTCAGCACAGACATTCCACAAGCGTAGAATCGTTGAGGGTCTAATGATCCAACAATTCCGCCCCACTGCTGTCGATGGCGGATGGAGTGACTTTGGAAACTGGAGCGAGTGCAGTGTGACTTGTGGAGATGGACAGCAGGAACGCTCGCTGGACGGTGGCTGGAGTAACTTTGGAGACTGGAGCGAGTGCAGTGTGACGTGTGGAGGCGGAATAAAGGAACGCAGAAGAACCTGTACCAGTCCTCCTCCGTCAAATGGTGGCGCGTGTTTTGTTGGAGACAACGTGGAGGCAGAACGCTGCAACACTGAATCTTGTGAAGAGGAAATAGTTTATGGTGGGTGGAGTGACTGGTCGCAATACGGCGAGTGCAAAAACCAGAAGGGCTGTGGTAAGGGGAGGAAAACTCGTACCCGTACCTGCACTAACCCACCCCCCTCAGGAGGTGGAAGGAACTGCAAGGGAAAACCCAAACAGTCGAAGAAATGTAGACTTGTGTCATGCAAAGGTATGGAGAATTGA

Protein

Uniprot

Uniprot term	Description
B3EWY9	Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B3EWZ3	Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR052065	Family	Complement and asymmetry regulator	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906	PROPERDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan