Detailed information of evm.model.Ap13.2149 in Astrangia poculata

Genomic Location: Ap13:23176659...23198183
NR annotation: KAJ7330759.1, RNA binding [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q497V5S1 RNA-binding domain-containing protein 1 OS=Mus musculus OX=10090 GN=Srbd1 PE=2 SV=3
Q8N5C6S1 RNA-binding domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SRBD1 PE=1 SV=2
Q5RDI0S1 RNA-binding domain-containing protein 1 OS=Pongo abelii OX=9601 GN=SRBD1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan
PF12836HHH_3Helix-hairpin-helix motifDomainInterproscan
PF16921Tex_YqgFTex protein YqgF-like domainDomainInterproscan
PF02784Orn_Arg_deC_NPyridoxal-dependent decarboxylase, pyridoxal binding domainDomainInterproscan
PF09371Tex_NTex-like protein N-terminal domainDomainInterproscan
PF00278Orn_DAP_Arg_deCPyridoxal-dependent decarboxylase, C-terminal sheet domainDomainInterproscan
PF17674HHH_9HHH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR003029DomainS1 domainInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR032639DomainTex protein, YqgF-like domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR009006Homologous_superfamilyAlanine racemase/group IV decarboxylase, C-terminalInterproscan
IPR029066Homologous_superfamilyPLP-binding barrelInterproscan
IPR050437FamilyBacterial ribosomal protein bS1Interproscan
IPR022644DomainOrn/DAP/Arg decarboxylase 2, N-terminalInterproscan
IPR023319Homologous_superfamilyTex-like protein, HTH domain superfamilyInterproscan
IPR018974DomainTex-like protein, N-terminalInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR022643DomainOrn/DAP/Arg decarboxylase 2, C-terminalInterproscan
IPR041692DomainHHH domain 9Interproscan
IPR022657Conserved_siteOrn/DAP/Arg decarboxylase 2, conserved siteInterproscan
IPR006641DomainYqgF/RNase H-like domainInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR1072430S RIBOSOMAL PROTEIN S1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01900LSC2; succinyl-CoA synthetase beta subunitEC:6.2.1.4
EC:6.2.1.5
Exosomeko04147deepkoala

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