Gene detail

Detailed information of evm.model.Ap13.2214 in Astrangia poculata

Genomic Location: Ap13:23747679...23758678
NR annotation: CAH3109066.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap13.2214

atggcggattcatttggtaactacattgccgcgtttcttatggctggtggagttggagttgttggctcgatcattccattcactctttcgtgttttaaaagagaatcggaacagaacattgaccataacttgacagacttgattggtggtatcaaacactgtgatgatcttgacattcctgctgacaaaagctccactctatatctgtttattggcatatttgcctcgctaggccgtcttggagcaggattgttatgcaatatggaatgcacaaacagtcttcgtctgtttcaagcagcagtctttgttatgggagcttccacaatgctacttacgctagcaaaaagctatgctgcattggcagtgtatgccattacgtttagtatagcagatggaatgttgataacgactttcatcattgaatgcatgaatatggaaagcgtagaagaatcaaaacgagcctctgcgttcggtttcgctttgatgtcttccgggatattagctttgtgcagtccacctttatcagggttcatggctgatacgtttggtaactacattgccgcgtttctaatggctggtggagttggagttgttggttcgatcattccattcattctttattgtattaaaaaggaagcagaacagaacattgaccataacttgactggcggacaagatagcgtttggtcgtggtttatttgtttctgtacgacaacatgcatgattttaacacttggatttgctttcgctctcggtgtactttttcccgttctgatggattcttttgaagaaagccgggaaagaacagcgtgggccacatctatcatccttggcgtcaactgtttccttggtcctgttatgagtgcactcctcaacagatttggatttcgaataactaccatattaggatgcctgtcatgttcagctggcctcgcactgggttcttttgctcccaacatcattatcttttacattgcctgcagcttgccttttgctgtgggcgtatcgttaatctacgtttcctcgacgaaaattgttactcattacttcgatgaaagacgatctgtcgccttcgggatcgtaacagccggccaaggactgggaacaatgattcttggacctacccttcaagcagttgtggacgtgtttgattggaggaatacattccgtgtgtttgctggaattgtgattgtggcatctctcactggatgtgttcttcatcaaaggacatcatcttctgatgatcacgaaaatgctccttccaagaaatttagattaaatttttcgttattaaagaatcctaccatcataatctttgtgataatacctggagtctacgcattctctcgtatggtgccatacgtgcatctcattaaacactgtgatgatcttggcattcctgctgacaaaagcgccaccctgtacctgtttattggcatattcgccacactaggccgccttggaggaggatttctgtgcaatatgagatgcacaaacagtctacgtctgtttcaagcggcagtcttcgttatgggagcttccacaatgctactaaccctggcaaaaacctatggtgcattggtagtgtatgctattgtctttagtatggcagatggaatgatgataacgaccttcgtcatcgaatgcatgagtatggaaaccgtagaagaatcgaaacgactctctgtattcggtttcacaatgatgtctaccgggatttttgctttgagcagtccgcctttatcagggttcatggctgacaagtttggtaactacactgctgcgttcctcatggcgggtggagctggagttattgcatcgatcattccattttttcttctctgtgttaagcgagaatcagaggaacttgttgatcatgacgtcgagttggaattagacgaggttcaaagtgaggctactgatcatatggatgaagaggaacctaaaccgagaagtttttcacgggtatcagccctcataaaccgtgctgatcgtcaaagatcaaaatcgttcattacggccatgaagtatccactttattaa

Transcript

evm.model.Ap13.2214

ATGGCGGATTCATTTGGTAACTACATTGCCGCGTTTCTTATGGCTGGTGGAGTTGGAGTTGTTGGCTCGATCATTCCATTCACTCTTTCGTGTTTTAAAAGAGAATCGGAACAGAACATTGACCATAACTTGACAGACTTGATTGGTGGTATCAAACACTGTGATGATCTTGACATTCCTGCTGACAAAAGCTCCACTCTATATCTGTTTATTGGCATATTTGCCTCGCTAGGCCGTCTTGGAGCAGGATTGTTATGCAATATGGAATGCACAAACAGTCTTCGTCTGTTTCAAGCAGCAGTCTTTGTTATGGGAGCTTCCACAATGCTACTTACGCTAGCAAAAAGCTATGCTGCATTGGCAGTGTATGCCATTACGTTTAGTATAGCAGATGGAATGTTGATAACGACTTTCATCATTGAATGCATGAATATGGAAAGCGTAGAAGAATCAAAACGAGCCTCTGCGTTCGGTTTCGCTTTGATGTCTTCCGGGATATTAGCTTTGTGCAGTCCACCTTTATCAGGGTTCATGGCTGATACGTTTGGTAACTACATTGCCGCGTTTCTAATGGCTGGTGGAGTTGGAGTTGTTGGTTCGATCATTCCATTCATTCTTTATTGTATTAAAAAGGAAGCAGAACAGAACATTGACCATAACTTGACTGGCGGACAAGATAGCGTTTGGTCGTGGTTTATTTGTTTCTGTACGACAACATGCATGATTTTAACACTTGGATTTGCTTTCGCTCTCGGTGTACTTTTTCCCGTTCTGATGGATTCTTTTGAAGAAAGCCGGGAAAGAACAGCGTGGGCCACATCTATCATCCTTGGCGTCAACTGTTTCCTTGGTCCTGTTATGAGTGCACTCCTCAACAGATTTGGATTTCGAATAACTACCATATTAGGATGCCTGTCATGTTCAGCTGGCCTCGCACTGGGTTCTTTTGCTCCCAACATCATTATCTTTTACATTGCCTGCAGCTTGCCTTTTGCTGTGGGCGTATCGTTAATCTACGTTTCCTCGACGAAAATTGTTACTCATTACTTCGATGAAAGACGATCTGTCGCCTTCGGGATCGTAACAGCCGGCCAAGGACTGGGAACAATGATTCTTGGACCTACCCTTCAAGCAGTTGTGGACGTGTTTGATTGGAGGAATACATTCCGTGTGTTTGCTGGAATTGTGATTGTGGCATCTCTCACTGGATGTGTTCTTCATCAAAGGACATCATCTTCTGATGATCACGAAAATGCTCCTTCCAAGAAATTTAGATTAAATTTTTCGTTATTAAAGAATCCTACCATCATAATCTTTGTGATAATACCTGGAGTCTACGCATTCTCTCGTATGGTGCCATACGTGCATCTCATTAAACACTGTGATGATCTTGGCATTCCTGCTGACAAAAGCGCCACCCTGTACCTGTTTATTGGCATATTCGCCACACTAGGCCGCCTTGGAGGAGGATTTCTGTGCAATATGAGATGCACAAACAGTCTACGTCTGTTTCAAGCGGCAGTCTTCGTTATGGGAGCTTCCACAATGCTACTAACCCTGGCAAAAACCTATGGTGCATTGGTAGTGTATGCTATTGTCTTTAGTATGGCAGATGGAATGATGATAACGACCTTCGTCATCGAATGCATGAGTATGGAAACCGTAGAAGAATCGAAACGACTCTCTGTATTCGGTTTCACAATGATGTCTACCGGGATTTTTGCTTTGAGCAGTCCGCCTTTATCAGGGTTCATGGCTGACAAGTTTGGTAACTACACTGCTGCGTTCCTCATGGCGGGTGGAGCTGGAGTTATTGCATCGATCATTCCATTTTTTCTTCTCTGTGTTAAGCGAGAATCAGAGGAACTTGTTGATCATGACGTCGAGTTGGAATTAGACGAGGTTCAAAGTGAGGCTACTGATCATATGGATGAAGAGGAACCTAAACCGAGAAGTTTTTCACGGGTATCAGCCCTCATAAACCGTGCTGATCGTCAAAGATCAAAATCGTTCATTACGGCCATGAAGTATCCACTTTATTAA

Protein

Uniprot

Uniprot term	Description
Q8BGC3	Monocarboxylate transporter 12 OS=Mus musculus OX=10090 GN=Slc16a12 PE=1 SV=1
Q6P2X9	Monocarboxylate transporter 12 OS=Xenopus tropicalis OX=8364 GN=slc16a12 PE=2 SV=1
D4A734	Monocarboxylate transporter 12 OS=Rattus norvegicus OX=10116 GN=Slc16a12 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR050327	Family	Proton-linked Monocarboxylate Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11360	MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0008028	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08187	SLC16A10; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 10	-	Transporters	ko02000	deepkoala