Gene detail

Detailed information of evm.model.Ap14.1361 in Astrangia poculata

Genomic Location: Ap14:14637049...14653074
NR annotation: XP_020608030.1, probable ATP-dependent RNA helicase DDX4 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap14.1361

atgtgtgaaagtaaccagagcacagcacttcacaagtttttccgatccacgtgcgaacctttggcaactgggcgaggagaagttgaagacgttgaagctgtcggtcgaagaaaaatgcacgctagctcaccatcgtcatggaccccaagccagagaggagatacagcgaatagcagttactcagggtcgaaaggacaaaacttttcaagacctccacgacgggaagaattcaaggcttacgtaaagaatgttccatcacatatcaccaaggagagtcttgaagcatttttccaaggttgtgggactgtagtatcatgtcatgtcatggagcccaaagaaggaagaaatagcaccattggttttgtgggattttcatctgaagaagaagtcaacaatgcaatacagacaatgaatggtaccacattagaaggtagccagctagctgtagaaagagcgattcaacgagacagaggtactgggacacccatgagaggtcaagaaaatcagtatcaaggtccaaaaacagggtttcaacattctgcgggaggggaagaattcaaggcttatgtgaagaatgttcctgcacatatcaccaaggaaagtcttgaagcatttttccaacgctgtgggactgtagtatcatgtcatgtcatggagcccaaagaaggaagaaatagtactgttggttttgtgggattttcatctgaagaagaggtcaacaatgcaatacagacaatgaacggcacctcattagaaagtaaccagctaacagtagaaagagcgattcaacgagacagaggtactgggacacccatgaggggtcaagaaaatctgtatcagggcccaagaacagattttaaacattctgcgggttttcaaaatggacagccgtcacatcaagggtatagaccaaaacagtatgaacagcctcacaattacacgcagcagccaggtggagtgaaagttgagcaagctatattcaatccaagaggacctggacgcgggattcctatgcagtcacctggtcctaatcctgtaccagggagagacagcaatcacgtgaatggtgtgcctaatgaatattcaaataatactcaaggtccagcaaatccaccttcatggacaaatcaggggccacagcagtgggatcatagtaattctgttgataatcagcacatgcctattagtggacagttcccgcagggtcccatgtcgcaagaaccatacaaccaacaacaacagccacaatttcagaatggtgccttgcctcaagagccgtacaaccaaacagatccacacggccaatttcaaaatggtccagctaatccaccttcatggtcaaatcagcagccacagcaatgggatcaggctaatcagcaattgcctatgagtggacagttccagcagggtcccatgcctcaagaaccatacgaccaacaacaacaacagccacaatttcagaatggtccagaaaatctaccttcatggacaaatcaggggccgcagcaatgggatcagactaattctgttgataaccagcacatgggtatggctggacagttcccgcagggtgccatgccgcaagaaccatacaaccaacaacaacaacagccaccatttcagaatggtccaccttcatggtcgaatcagggccctcagcagtgggatcagagtaattctgttgataatcagcaaatacctataaatggacagttcccgcaggggcccatgccacaagaaccatacaaccaaacagattcacatggacaatttcaaaatggtcccatgccacaagagccatacaaccaacacgaacaacatggacaatttcaaaatggtagttatcagtactttgtgctatcatactactgtgtgacgacagcacataaagataataattgtatatccacccttgatgtattgttgacttacctaggtccagctaatccagcttcatggtcagatcagggaccacagcagtgggatcaaactaattctgtaaataatcagcaaatgagtggacgattaccatacaataccatacctcaagaacaatatacccaacaagaacaaaagccacggtttcagggtggtggtcaaagctgtcataaatgtggtgaagttggtcactttgcacgggaatgccccacccagggtgaacaagggggaagaggttag

Transcript

evm.model.Ap14.1361

ATGTGTGAAAGTAACCAGAGCACAGCACTTCACAAGTTTTTCCGATCCACGTGCGAACCTTTGGCAACTGGGCGAGGAGAAGTTGAAGACGTTGAAGCTGTCGGTCGAAGAAAAATGCACGCTAGCTCACCATCGTCATGGACCCCAAGCCAGAGAGGAGATACAGCGAATAGCAGTTACTCAGGGTCGAAAGGACAAAACTTTTCAAGACCTCCACGACGGGAAGAATTCAAGGCTTACGTAAAGAATGTTCCATCACATATCACCAAGGAGAGTCTTGAAGCATTTTTCCAAGGTTGTGGGACTGTAGTATCATGTCATGTCATGGAGCCCAAAGAAGGAAGAAATAGCACCATTGGTTTTGTGGGATTTTCATCTGAAGAAGAAGTCAACAATGCAATACAGACAATGAATGGTACCACATTAGAAGGTAGCCAGCTAGCTGTAGAAAGAGCGATTCAACGAGACAGAGGTACTGGGACACCCATGAGAGGTCAAGAAAATCAGTATCAAGGTCCAAAAACAGGGTTTCAACATTCTGCGGGAGGGGAAGAATTCAAGGCTTATGTGAAGAATGTTCCTGCACATATCACCAAGGAAAGTCTTGAAGCATTTTTCCAACGCTGTGGGACTGTAGTATCATGTCATGTCATGGAGCCCAAAGAAGGAAGAAATAGTACTGTTGGTTTTGTGGGATTTTCATCTGAAGAAGAGGTCAACAATGCAATACAGACAATGAACGGCACCTCATTAGAAAGTAACCAGCTAACAGTAGAAAGAGCGATTCAACGAGACAGAGGTACTGGGACACCCATGAGGGGTCAAGAAAATCTGTATCAGGGCCCAAGAACAGATTTTAAACATTCTGCGGGTTTTCAAAATGGACAGCCGTCACATCAAGGGTATAGACCAAAACAGTATGAACAGCCTCACAATTACACGCAGCAGCCAGGTGGAGTGAAAGTTGAGCAAGCTATATTCAATCCAAGAGGACCTGGACGCGGGATTCCTATGCAGTCACCTGGTCCTAATCCTGTACCAGGGAGAGACAGCAATCACGTGAATGGTGTGCCTAATGAATATTCAAATAATACTCAAGGTCCAGCAAATCCACCTTCATGGACAAATCAGGGGCCACAGCAGTGGGATCATAGTAATTCTGTTGATAATCAGCACATGCCTATTAGTGGACAGTTCCCGCAGGGTCCCATGTCGCAAGAACCATACAACCAACAACAACAGCCACAATTTCAGAATGGTGCCTTGCCTCAAGAGCCGTACAACCAAACAGATCCACACGGCCAATTTCAAAATGGTCCAGCTAATCCACCTTCATGGTCAAATCAGCAGCCACAGCAATGGGATCAGGCTAATCAGCAATTGCCTATGAGTGGACAGTTCCAGCAGGGTCCCATGCCTCAAGAACCATACGACCAACAACAACAACAGCCACAATTTCAGAATGGTCCAGAAAATCTACCTTCATGGACAAATCAGGGGCCGCAGCAATGGGATCAGACTAATTCTGTTGATAACCAGCACATGGGTATGGCTGGACAGTTCCCGCAGGGTGCCATGCCGCAAGAACCATACAACCAACAACAACAACAGCCACCATTTCAGAATGGTCCACCTTCATGGTCGAATCAGGGCCCTCAGCAGTGGGATCAGAGTAATTCTGTTGATAATCAGCAAATACCTATAAATGGACAGTTCCCGCAGGGGCCCATGCCACAAGAACCATACAACCAAACAGATTCACATGGACAATTTCAAAATGGTCCCATGCCACAAGAGCCATACAACCAACACGAACAACATGGACAATTTCAAAATGGTAGTTATCAGTACTTTGTGCTATCATACTACTGTGTGACGACAGCACATAAAGATAATAATTGTATATCCACCCTTGATGTATTGTTGACTTACCTAGGTCCAGCTAATCCAGCTTCATGGTCAGATCAGGGACCACAGCAGTGGGATCAAACTAATTCTGTAAATAATCAGCAAATGAGTGGACGATTACCATACAATACCATACCTCAAGAACAATATACCCAACAAGAACAAAAGCCACGGTTTCAGGGTGGTGGTCAAAGCTGTCATAAATGTGGTGAAGTTGGTCACTTTGCACGGGAATGCCCCACCCAGGGTGAACAAGGGGGAAGAGGTTAG

Protein

Uniprot

Uniprot term	Description
Q08935	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
P82277	Small ribosomal subunit protein cS22 OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1
P49313	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan