Gene detail

Detailed information of evm.model.Ap2.2473 in Astrangia poculata

Genomic Location: Ap2:26067117...26071091
NR annotation: CAH3148227.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap2.2473

atggcttgttcctcgccaactacgttatctactaaggagacaacaaactatgctcgcttgtgtcgtctgctggttgatgttggtacacaggcacttagagaaacattcgatgctatccacccaccagcaagtcttcacacagttttggcgggaaataaaaccacgttgcaaacactcagaacaaggaaaattattaatccaacacaatggggaaagctctttcctgccattcctacttcagtgtcaacagcccattttgataccacacttttgatggttctgttgcgaaacatatgtggcttaccttctccagcaactggctgggacaaactccctgctgtagcagacgtgagtcgtgaagcagagatcgctcgtataaagtattttagaaacaccgtgtacgctcatgtcgagcacgcttcggttgatgacgcaacattcaacacatactggcaagacatccgggataccctggtgagactgggaggagttcagtacagagcagctatcgacaatctggaaactgagtgcatggatccagaaattgaagatcactacaaagaacttctcagccaatggaagaaggatgaagacaacgtaaaagatcagctgaatgaaattggaagcgaaattagaaacgtcaggaaaaagctagatgacttgacagcatcaggtttcacgtcaagaaaggaaatcggcattgaagggttcaagttggaagagttggagaggatgaaccgacctacaatgtgtggtgaagaatatcacgaacatgagcaacttgaatatttctgccgagaatgccaaatctgtatttgcaacaagtgtgcactcataacgcatcatcgtcacaccatagtgaaaacacaacatgccgctgataaaagcaaggtcctaatggaagagtttctccagaatgtaaaaacacagatcgacgactttgaaaaacagatgagaaaggaaactgagtttttgaaaagcacgagagaagacatcgctttagcccgcaaaaatgcgcgtacaactgctgagcacgttattcgatttgtaaaggaacatgaaatggccatcatggccgagttagatgcccttgatgacgaacaacaaagaagtcacgcaatgcagcaagaacagttccggttgcttgtcacgcagttaaaaagtaacgtggaatactgtgaagccatcttgaaaagaaacaacagtcttgaaattctacagaaacaacagagtgctgttgaacgttgtcaaagacttctgaatgttgaaaaaatgaatatttacagaccatggcatgtcagttacgtgacaaatgaaggggctattcaaactgcactgcagacacttccgggtcaggtaattgttagttttacaaattcgttgcaatcagtggcagaaggcaaagctttggaagggggagacgttggcagagaaaccgattttgccatcgtaacaaaagatttcgaggggagaatgtgctattacaagaacgaccaagtggcagttacgataaagactccgttgggggaagatctagaaacgacgatcgaaaacaagcaagatggcagatatattgtgcatttcacaccaaattgccctgggcagcatcacgtgatcatggctgttaacggccagccgctgactggtagtccctggagtgttcaggtgtctgcacaccagtacaaacatgtgtataaatttggcacaagtggaacaggaagaggacagtttgacgatccatttgacattgcagtgtgtaacaaaacagggaacattgcggttgcagactgtcaaaataacagagttcaactgttcagttcagatggcagtttcttgagagaatttggtcacaagggacatggctccgagagacttaacgagccgttctcagtagcattcaccaggtctggtgaagtcgttgttgtccattccggtaccatttcggtgttcaccgaaagttgtcagtttataaaacacatctccaatggccaagtctccgtgggcgttatctattgcacgtga

Transcript

evm.model.Ap2.2473

ATGGCTTGTTCCTCGCCAACTACGTTATCTACTAAGGAGACAACAAACTATGCTCGCTTGTGTCGTCTGCTGGTTGATGTTGGTACACAGGCACTTAGAGAAACATTCGATGCTATCCACCCACCAGCAAGTCTTCACACAGTTTTGGCGGGAAATAAAACCACGTTGCAAACACTCAGAACAAGGAAAATTATTAATCCAACACAATGGGGAAAGCTCTTTCCTGCCATTCCTACTTCAGTGTCAACAGCCCATTTTGATACCACACTTTTGATGGTTCTGTTGCGAAACATATGTGGCTTACCTTCTCCAGCAACTGGCTGGGACAAACTCCCTGCTGTAGCAGACGTGAGTCGTGAAGCAGAGATCGCTCGTATAAAGTATTTTAGAAACACCGTGTACGCTCATGTCGAGCACGCTTCGGTTGATGACGCAACATTCAACACATACTGGCAAGACATCCGGGATACCCTGGTGAGACTGGGAGGAGTTCAGTACAGAGCAGCTATCGACAATCTGGAAACTGAGTGCATGGATCCAGAAATTGAAGATCACTACAAAGAACTTCTCAGCCAATGGAAGAAGGATGAAGACAACGTAAAAGATCAGCTGAATGAAATTGGAAGCGAAATTAGAAACGTCAGGAAAAAGCTAGATGACTTGACAGCATCAGGTTTCACGTCAAGAAAGGAAATCGGCATTGAAGGGTTCAAGTTGGAAGAGTTGGAGAGGATGAACCGACCTACAATGTGTGGTGAAGAATATCACGAACATGAGCAACTTGAATATTTCTGCCGAGAATGCCAAATCTGTATTTGCAACAAGTGTGCACTCATAACGCATCATCGTCACACCATAGTGAAAACACAACATGCCGCTGATAAAAGCAAGGTCCTAATGGAAGAGTTTCTCCAGAATGTAAAAACACAGATCGACGACTTTGAAAAACAGATGAGAAAGGAAACTGAGTTTTTGAAAAGCACGAGAGAAGACATCGCTTTAGCCCGCAAAAATGCGCGTACAACTGCTGAGCACGTTATTCGATTTGTAAAGGAACATGAAATGGCCATCATGGCCGAGTTAGATGCCCTTGATGACGAACAACAAAGAAGTCACGCAATGCAGCAAGAACAGTTCCGGTTGCTTGTCACGCAGTTAAAAAGTAACGTGGAATACTGTGAAGCCATCTTGAAAAGAAACAACAGTCTTGAAATTCTACAGAAACAACAGAGTGCTGTTGAACGTTGTCAAAGACTTCTGAATGTTGAAAAAATGAATATTTACAGACCATGGCATGTCAGTTACGTGACAAATGAAGGGGCTATTCAAACTGCACTGCAGACACTTCCGGGTCAGGTAATTGTTAGTTTTACAAATTCGTTGCAATCAGTGGCAGAAGGCAAAGCTTTGGAAGGGGGAGACGTTGGCAGAGAAACCGATTTTGCCATCGTAACAAAAGATTTCGAGGGGAGAATGTGCTATTACAAGAACGACCAAGTGGCAGTTACGATAAAGACTCCGTTGGGGGAAGATCTAGAAACGACGATCGAAAACAAGCAAGATGGCAGATATATTGTGCATTTCACACCAAATTGCCCTGGGCAGCATCACGTGATCATGGCTGTTAACGGCCAGCCGCTGACTGGTAGTCCCTGGAGTGTTCAGGTGTCTGCACACCAGTACAAACATGTGTATAAATTTGGCACAAGTGGAACAGGAAGAGGACAGTTTGACGATCCATTTGACATTGCAGTGTGTAACAAAACAGGGAACATTGCGGTTGCAGACTGTCAAAATAACAGAGTTCAACTGTTCAGTTCAGATGGCAGTTTCTTGAGAGAATTTGGTCACAAGGGACATGGCTCCGAGAGACTTAACGAGCCGTTCTCAGTAGCATTCACCAGGTCTGGTGAAGTCGTTGTTGTCCATTCCGGTACCATTTCGGTGTTCACCGAAAGTTGTCAGTTTATAAAACACATCTCCAATGGCCAAGTCTCCGTGGGCGTTATCTATTGCACGTGATGATTGCATGATTGTGTGTGACAGTGGCGACAAAGCAATCAAAGTTCTCTCACCCGACGGTACAGAATTGTTACAGTCCTTCAGTGCTCCAGACTGTGATGAGTCCCCTTGGTTCGCTGTTTTTCACCAAGACGTGTTCTTTGTGTCCTATGATGGAGTTCATTGCGTAAAGGCGTTCAGTAAGGAAGGTTTGTTTCTCTTTGATATTGGTAGTGAGGGACCTCGTGCCACGCAGTTAAAGGGTCCTTTTGGATTTGCTGTTGACAGGTTTAACAACCTCATCGTTTGTGACTATGACAACCAAAGACTGCAAGCGTTTACACTGGATGGAGAGTTTGTCAACGAAGTTGGGCAACAGCTTACCAAACATGTGGTACCTTGGTCTGTTGCCATCTCGAAGAACGGACAATTACTTGTCACTGATCCAGCTGACAACTGCGTTCATGTTTTTGAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF18738	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR041249	Domain	DZIP3-like HEPN domain	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46844	SLR5058 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan