Gene detail

Detailed information of evm.model.Ap2.2498 in Astrangia poculata

Genomic Location: Ap2:26308549...26312551
NR annotation: XP_022798487.1, uncharacterized protein LOC111336627 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap2.2498

atgtccgctatcgaataccgtaatttactgtatgagataagccggcaaatcgattggttaactgaacgacagcggttactatttatctgcgaagccgaaggattgattgtgacaggaagtgaaagcaatatccaagaagtcctctctttgtttaaagggctggaggagcggaatcatctaggaatcgatcgtctagaagtactgaaggatcttttaaaaggcacagggaaatggaatctcctaggattagtcgaaaaatttgaaatcaaaagaaaagagtacaacaatttactagaacagatttgctttgcactcgatcagggcaaccatctagaacgagtcatttcaatgtgcaaagaaaatatatcgtatgacagggaaagagacttcaaagatgttcgaacactgtttacagaactagaaaaacagaataacttgggaatcgcacgccttgacatcttgaaaaacattgtgttagacgcagagaaaccagacttgcttgaacaaattgtggagtttgaggagaagagaaaacaggaggaaattgaggagagaaaaagagctgagtttgaggaatcaaggataagaacaaaagatcaggctgttgctgttttgtcttctgccaaaattgctggagagaagttattaggaacctttacacctcattgtactttccgtaatgttgctggtggtatggtagtcgttactacatggatgatcctacgaagaagttcaaatctcgaagaatttgtaaacgcttttacagaagcaattcttccacttggcaataccctgcgagcaataagcgaaggatctgtgtgcttcacgatacaggctgaaaacagatcagctcttcaggcattgtgggaacgataccagaacggcacactgcaaaaagacctgcaagagtttctagtgactgaagatgttaaacaacttgcaaatggcgaggaagtgattttgactgtggaaattgatgaacaagaatataagaatgcatgtttagacctgaaggtagcagaaacacaagttgaaggttttcaagacgtggaacttggctcaaaatctaagtttacgttcgtgaccagagatcttgaaggacacaagttctataatgcagacaatgaggtaacggtacttacactggatggtacttacactgtaagttttacaccagacactgtaggtccgcatagcgtgttaatcacagttaatggccagccgctgaccggtagtccctggagtgttcaggtgtctcctcatcagtacaaacaagtgtttacatttggatcacgtggcagtggacccggacagtttgatttgtctcacggtggttcaattaacggcatttctattaacgagaacactgaccacattgcagtagcagacactcacaataatagagttcaaatatttagtgcagatggctcttacctgagagagtttggtcagaggggcattaaagctgaacgagtacgcagtccacgcgcagttgcgttcaccaaaaatggcgaccttattgtctatcatactggtaagatttctctattcagtgagagtggtcagtttattaagcacatcaccaacaagcacctaaaggttgcaatgagcttttctttagcatctgatgacaatatcgtcgcgtgcgactgggatgacaagaaaatcaaggacctctcccctgaaggtacaaaattgttacagtgttttactgctccagattgtagagagtccctgttttccgctgtttatcaccaggacatgatttttgcgtcataccacggggctcattgtcttaaagtgttcaacaaggaaggggtgtttctgtatgatattggcagtgaggggtctggtgatggtcagttgagttggcccagagggatcgctatcgacaagtttaacaatctgattgtgtctgacagtggtaacaacaggctgcaagtcttcacactggatggaagatttgtaaacacgataaaagaacagatcactgaacttgggtctcctcattctatatctgtgtccaacactggtcaagtgtttgtaactgatgtagccaccaactgtattcatgtattccagtag

Transcript

evm.model.Ap2.2498

ATGTCCGCTATCGAATACCGTAATTTACTGTATGAGATAAGCCGGCAAATCGATTGGTTAACTGAACGACAGCGGTTACTATTTATCTGCGAAGCCGAAGGATTGATTGTGACAGGAAGTGAAAGCAATATCCAAGAAGTCCTCTCTTTGTTTAAAGGGCTGGAGGAGCGGAATCATCTAGGAATCGATCGTCTAGAAGTACTGAAGGATCTTTTAAAAGGCACAGGGAAATGGAATCTCCTAGGATTAGTCGAAAAATTTGAAATCAAAAGAAAAGAGTACAACAATTTACTAGAACAGATTTGCTTTGCACTCGATCAGGGCAACCATCTAGAACGAGTCATTTCAATGTGCAAAGAAAATATATCGTATGACAGGGAAAGAGACTTCAAAGATGTTCGAACACTGTTTACAGAACTAGAAAAACAGAATAACTTGGGAATCGCACGCCTTGACATCTTGAAAAACATTGTGTTAGACGCAGAGAAACCAGACTTGCTTGAACAAATTGTGGAGTTTGAGGAGAAGAGAAAACAGGAGGAAATTGAGGAGAGAAAAAGAGCTGAGTTTGAGGAATCAAGGATAAGAACAAAAGATCAGGCTGTTGCTGTTTTGTCTTCTGCCAAAATTGCTGGAGAGAAGTTATTAGGAACCTTTACACCTCATTGTACTTTCCGTAATGTTGCTGGTGGTATGGTAGTCGTTACTACATGGATGATCCTACGAAGAAGTTCAAATCTCGAAGAATTTGTAAACGCTTTTACAGAAGCAATTCTTCCACTTGGCAATACCCTGCGAGCAATAAGCGAAGGATCTGTGTGCTTCACGATACAGGCTGAAAACAGATCAGCTCTTCAGGCATTGTGGGAACGATACCAGAACGGCACACTGCAAAAAGACCTGCAAGAGTTTCTAGTGACTGAAGATGTTAAACAACTTGCAAATGGCGAGGAAGTGATTTTGACTGTGGAAATTGATGAACAAGAATATAAGAATGCATGTTTAGACCTGAAGGTAGCAGAAACACAAGTTGAAGGTTTTCAAGACGTGGAACTTGGCTCAAAATCTAAGTTTACGTTCGTGACCAGAGATCTTGAAGGACACAAGTTCTATAATGCAGACAATGAGGTAACGGTACTTACACTGGATGGTACTTACACTGTAAGTTTTACACCAGACACTGTAGGTCCGCATAGCGTGTTAATCACAGTTAATGGCCAGCCGCTGACCGGTAGTCCCTGGAGTGTTCAGGTGTCTCCTCATCAGTACAAACAAGTGTTTACATTTGGATCACGTGGCAGTGGACCCGGACAGTTTGATTTGTCTCACGGTGGTTCAATTAACGGCATTTCTATTAACGAGAACACTGACCACATTGCAGTAGCAGACACTCACAATAATAGAGTTCAAATATTTAGTGCAGATGGCTCTTACCTGAGAGAGTTTGGTCAGAGGGGCATTAAAGCTGAACGAGTACGCAGTCCACGCGCAGTTGCGTTCACCAAAAATGGCGACCTTATTGTCTATCATACTGGTAAGATTTCTCTATTCAGTGAGAGTGGTCAGTTTATTAAGCACATCACCAACAAGCACCTAAAGGTTGCAATGAGCTTTTCTTTAGCATCTGATGACAATATCGTCGCGTGCGACTGGGATGACAAGAAAATCAAGGACCTCTCCCCTGAAGGTACAAAATTGTTACAGTGTTTTACTGCTCCAGATTGTAGAGAGTCCCTGTTTTCCGCTGTTTATCACCAGGACATGATTTTTGCGTCATACCACGGGGCTCATTGTCTTAAAGTGTTCAACAAGGAAGGGGTGTTTCTGTATGATATTGGCAGTGAGGGGTCTGGTGATGGTCAGTTGAGTTGGCCCAGAGGGATCGCTATCGACAAGTTTAACAATCTGATTGTGTCTGACAGTGGTAACAACAGGCTGCAAGTCTTCACACTGGATGGAAGATTTGTAAACACGATAAAAGAACAGATCACTGAACTTGGGTCTCCTCATTCTATATCTGTGTCCAACACTGGTCAAGTGTTTGTAACTGATGTAGCCACCAACTGTATTCATGTATTCCAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF20694	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR049341	Domain	TRADD-like N-terminal domain	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan