Gene detail

Detailed information of evm.model.Ap2.2515 in Astrangia poculata

Genomic Location: Ap2:26464640...26480224
NR annotation: XP_022798487.1, uncharacterized protein LOC111336627 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap2.2515

atgtcttctattgaatatcgtgccttacgctgcaaagttagccacggcatcaattggtcaaatgaaagcgaaacattgctttcgctttgtgaaggattgatagccgcagacagtgtaaacaacatcgaaaatgctgcctcgctgttcgcagaattggagagacagaataacttaggaattgaccacctcgacgtgttaaaagcacttttaaggggaatacataaatggactctaattgacgaaattgagaagttccaggtcagaagggaaacctacgtcagtttactagaaaagatcgtccttaaactcagcgagtatgatgttcgtcgattgatcgaaatatgtggacaacatttagcggcggatagggaaggtcacatcaacgatgttcacgccttattcaaggagcttgagagcaagaaccgtttaggggcagactgtctcaggattttaaaaaagattttgaaagaaacgggagaagaagatttgttaaaagaagtagaagatttcgagatgaaaaagagagatgaagagatagctgacaggcaaagaatggagactgagatgaaaagagaagctcgagcggcagcagtttacgcggtacccagagcagtaggaagaatgatgggagcagtaaatgtgcattgtaactttaagactgtgagtggtgtagtagtagcagtcggtgctggtgtggtgttatataagtactccagaggcgattccgacatccagcaatttgcaaatctttttaatgaagcaattcttccagcagctaccaacctatgcgcgataggcaacggctcgctatgcttcacaattcaggcagaaaatagatcaggtctacagttgctttggcaacaatatcgggacggcacactgcaaggaaatctgcaagagtttctggtgacggaggaaataaaacaactagcagacggtgaagacgtgattgtgactgtgcacattgatgaacaagaatttcaagatgcctgtctggatttgatgatgggagatgcacttcaagtcttcagcaacgaggaagatgatcgtctcggagaaagaattcgaagaaactctgattcagttttgtatgtgaagccaaaggagaatgaagtcacagtggtgctgtcgaaattgaaacaagcggagattaaatttcagcaggaaaagatagaacgtctggaaaagaaaatcaccgagatctctaactcagatgcaagctcggaggagaaactcgttgaagcgcatactcacgcagcttatggatcaagtgaagagttggaaacggtagcattacctcagtcactggctgcgtctgggtcgccaaaattgtcagacctctctcttgcagacttcctaggtcctcaggctcatttaccctcgacaagaaaattgttagacatcctagatcctgatttaccctcgagaaggatattgccagacatccttggccctgatatacccgatttaccctcgagaaggaaatcaaagaattgggatactgacagcagttacggttcagaaggtgaatcaagatttgaaagtgagaaacctttgaactacaaacaaagctctcattttgaagacgacttttccacggagtcgagagttgatcagttagaaccttcacaggagtctgcgattcaaacgcccgacattgagacaacagaagcaatctactatcttcaggctgacgaattagtccagccaaggtcttcaccctcagcttcgacagttctcccggctccaggtagtcttaggtcgtcttggccttctctagccttctggggtccaggtttgaaaaaagctgaggtggggagagaagttaatcttctattggagacaacagatgcggaaagcaagcgacgttataaagaagacgatcaaataatactcaaggttcaggatccattaggaaacgtcctcgaaaagaaaattgaagacagcgtagatggtgcttacactgtaagttttacacctgacactgaaggtccacatagtgtgctaattacagtgaataaaaagccactgactggtagtccctggagatttctggtgtgtccatatcagtaccaacacgtgtttacatttggatcacgtggcagtggaccgggtcagtttaattttcctcacggcatttcttttaacgagaacactgaccgcattgcagtaacagattctggtaataacagagtacaaatattcagtgctgatggctcttacctgagagagtttggtcagaagggaattgaagctgaacgactaagcagcccactctcagtagcattcaccaataatggcgacctcattgtcgttgattgtgttcaatctcgtgagatttcatttcttgataatcttagtaggatttctctgttcagtgaaagtggccagtttattaaacaaattaccaacgagaaccttcagaatgtaagtcgcctgtcagtggcacctgatggcaacataattatgtatgacgttagtgactcgaaggtcaaggttttctccccggacggtgtggagttgttacaggccttccgtgctgacccgcccaatgatatagtttatcatcaagaaatgttctttgtttccttacccttggctaattgtgtcagagtgtataatagagaaggagcgattctttatgatattggccgtgttacccgacggttgagttgtcctactggacttgccattgacaagtttaataacttgatcgtttgtgactctgctaactaccgacttcaagtgttcaccctggacggaatgtttttaaacacgataggcggattacccagtgaattagattaccctaggactgttgctgtgtcgaaaaccggtcatgtgtatgttactgatgccacaacacatcgtgttcatatgtttcgataa

Transcript

evm.model.Ap2.2515

ATGTCTTCTATTGAATATCGTGCCTTACGCTGCAAAGTTAGCCACGGCATCAATTGGTCAAATGAAAGCGAAACATTGCTTTCGCTTTGTGAAGGATTGATAGCCGCAGACAGTGTAAACAACATCGAAAATGCTGCCTCGCTGTTCGCAGAATTGGAGAGACAGAATAACTTAGGAATTGACCACCTCGACGTGTTAAAAGCACTTTTAAGGGGAATACATAAATGGACTCTAATTGACGAAATTGAGAAGTTCCAGGTCAGAAGGGAAACCTACGTCAGTTTACTAGAAAAGATCGTCCTTAAACTCAGCGAGTATGATGTTCGTCGATTGATCGAAATATGTGGACAACATTTAGCGGCGGATAGGGAAGGTCACATCAACGATGTTCACGCCTTATTCAAGGAGCTTGAGAGCAAGAACCGTTTAGGGGCAGACTGTCTCAGGATTTTAAAAAAGATTTTGAAAGAAACGGGAGAAGAAGATTTGTTAAAAGAAGTAGAAGATTTCGAGATGAAAAAGAGAGATGAAGAGATAGCTGACAGGCAAAGAATGGAGACTGAGATGAAAAGAGAAGCTCGAGCGGCAGCAGTTTACGCGGTACCCAGAGCAGTAGGAAGAATGATGGGAGCAGTAAATGTGCATTGTAACTTTAAGACTGTGAGTGGTGTAGTAGTAGCAGTCGGTGCTGGTGTGGTGTTATATAAGTACTCCAGAGGCGATTCCGACATCCAGCAATTTGCAAATCTTTTTAATGAAGCAATTCTTCCAGCAGCTACCAACCTATGCGCGATAGGCAACGGCTCGCTATGCTTCACAATTCAGGCAGAAAATAGATCAGGTCTACAGTTGCTTTGGCAACAATATCGGGACGGCACACTGCAAGGAAATCTGCAAGAGTTTCTGGTGACGGAGGAAATAAAACAACTAGCAGACGGTGAAGACGTGATTGTGACTGTGCACATTGATGAACAAGAATTTCAAGATGCCTGTCTGGATTTGATGATGGGAGATGCACTTCAAGTCTTCAGCAACGAGGAAGATGATCGTCTCGGAGAAAGAATTCGAAGAAACTCTGATTCAGTTTTGTATGTGAAGCCAAAGGAGAATGAAGTCACAGTGGTGCTGTCGAAATTGAAACAAGCGGAGATTAAATTTCAGCAGGAAAAGATAGAACGTCTGGAAAAGAAAATCACCGAGATCTCTAACTCAGATGCAAGCTCGGAGGAGAAACTCGTTGAAGCGCATACTCACGCAGCTTATGGATCAAGTGAAGAGTTGGAAACGGTAGCATTACCTCAGTCACTGGCTGCGTCTGGGTCGCCAAAATTGTCAGACCTCTCTCTTGCAGACTTCCTAGGTCCTCAGGCTCATTTACCCTCGACAAGAAAATTGTTAGACATCCTAGATCCTGATTTACCCTCGAGAAGGATATTGCCAGACATCCTTGGCCCTGATATACCCGATTTACCCTCGAGAAGGAAATCAAAGAATTGGGATACTGACAGCAGTTACGGTTCAGAAGGTGAATCAAGATTTGAAAGTGAGAAACCTTTGAACTACAAACAAAGCTCTCATTTTGAAGACGACTTTTCCACGGAGTCGAGAGTTGATCAGTTAGAACCTTCACAGGAGTCTGCGATTCAAACGCCCGACATTGAGACAACAGAAGCAATCTACTATCTTCAGGCTGACGAATTAGTCCAGCCAAGGTCTTCACCCTCAGCTTCGACAGTTCTCCCGGCTCCAGGTAGTCTTAGGTCGTCTTGGCCTTCTCTAGCCTTCTGGGGTCCAGGTTTGAAAAAAGCTGAGGTGGGGAGAGAAGTTAATCTTCTATTGGAGACAACAGATGCGGAAAGCAAGCGACGTTATAAAGAAGACGATCAAATAATACTCAAGGTTCAGGATCCATTAGGAAACGTCCTCGAAAAGAAAATTGAAGACAGCGTAGATGGTGCTTACACTGTAAGTTTTACACCTGACACTGAAGGTCCACATAGTGTGCTAATTACAGTGAATAAAAAGCCACTGACTGGTAGTCCCTGGAGATTTCTGGTGTGTCCATATCAGTACCAACACGTGTTTACATTTGGATCACGTGGCAGTGGACCGGGTCAGTTTAATTTTCCTCACGGCATTTCTTTTAACGAGAACACTGACCGCATTGCAGTAACAGATTCTGGTAATAACAGAGTACAAATATTCAGTGCTGATGGCTCTTACCTGAGAGAGTTTGGTCAGAAGGGAATTGAAGCTGAACGACTAAGCAGCCCACTCTCAGTAGCATTCACCAATAATGGCGACCTCATTGTCGTTGATTGTGTTCAATCTCGTGAGATTTCATTTCTTGATAATCTTAGTAGGATTTCTCTGTTCAGTGAAAGTGGCCAGTTTATTAAACAAATTACCAACGAGAACCTTCAGAATGTAAGTCGCCTGTCAGTGGCACCTGATGGCAACATAATTATGTATGACGTTAGTGACTCGAAGGTCAAGGTTTTCTCCCCGGACGGTGTGGAGTTGTTACAGGCCTTCCGTGCTGACCCGCCCAATGATATAGTTTATCATCAAGAAATGTTCTTTGTTTCCTTACCCTTGGCTAATTGTGTCAGAGTGTATAATAGAGAAGGAGCGATTCTTTATGATATTGGCCGTGTTACCCGACGGTTGAGTTGTCCTACTGGACTTGCCATTGACAAGTTTAATAACTTGATCGTTTGTGACTCTGCTAACTACCGACTTCAAGTGTTCACCCTGGACGGAATGTTTTTAAACACGATAGGCGGATTACCCAGTGAATTAGATTACCCTAGGACTGTTGCTGTGTCGAAAACCGGTCATGTGTATGTTACTGATGCCACAACACATCGTGTTCATATGTTTCGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF01335	DED	Death effector domain	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan