Gene detail

Detailed information of evm.model.Ap2.318 in Astrangia poculata

Genomic Location: Ap2:2943977...2947442
NR annotation: XP_020614355.1, homeobox protein MSH-B-like isoform X2 [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q91770	Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 SV=1
Q06615	Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto PE=2 SV=1
Q801E1	Ventral anterior homeobox 2 OS=Danio rerio OX=7955 GN=vax2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050877	Family	EMX/VAX/Noto Homeobox Transcription Factors	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24339	HOMEOBOX PROTEIN EMX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan