Gene detail

Detailed information of evm.model.Ap2.3361 in Astrangia poculata

Genomic Location: Ap2:34180721...34185883
NR annotation: XP_020627984.1, uncharacterized protein LOC110065185 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap2.3361

atgtttatcttccttgtgttacaagtttgttacctgctgttgaaagctgaaccaatacttccgtcaggtaaatctccatgtcttcatgacaaactttttgactttgaggatccaaatcagaaaagctgctttgaacttgttccaaaatcatcgggatcagtggacctctcaactgacatcctgaccgttaagcatggaaacagttcactcatgtggaaagcagatactgcctcaaagctgcaactaaaagcatcaaccttcagcattcctaatgactggcttaaacgtggcggcgttaaagtctggttctacaaggaaaaggcctcgccaggaaaaacattagaagtggaatacgaacattcctccaaaattgtcgccaagttcaaagcgaatcttaattttcaaggatggagaggaatttgggtgaaattctcagagtgcaagataaaacgtaaggtaacgaaacgcactgtcatcgacaaagttaactttgttctaagcgataaagacactatctacatggacttgctcgggtttgagaaaagctttggtgaacagtcacgtgacaaggtagttcctccaatcagtccgtttggcttggcggtgtatgacgcgagcaacacttggcagcggacttacaagtggagtcaagaacccattcctgagtcacctttgacaattgacgaaaaaaagaaggagagtttggaacatattgaaagccggctgaggaactggtactgtgacgagacaaaaacgacttcgaacttcccagaagacagctttctgaagaaaagtaaagctgagaagaggaaaaagtttggatttatcacgggaactatccttctacctctcgccttggaatatcacctaagatcgcgagcgaatgaagtaacagatgctgctataagccaactacccgagcttaattccggggacccagacaagatacaaaacgcttgtattgccattgcaggtaaaaatgaaaatatgcaaatgatatttaagaactacttgcctagttcaaaaacactgacactaggtcaagtggagattgcaataaacactttaaacctggatcgactaaacaaaataaacaaccttcttgactttttaaagcaacaaggatttgcagatggcagtggcctcggatcattgaaccacgaatggaacagagatggcgctggattcacgcacacactgttccttataagtgaatctttaaaacttccttccaacaaaagcagattgctggatttgataaacacagccaagtggtacaacgactttggagaaatttatcaatcgccaaaattcgaattcaaaggaacgactgctgaccgtatgatcacactaatgctatacagacttatgattgtactggtgatgccaagtgataacgatgaagaaatcaaagccaaactccgggacatggaagctttaaaaaggtggatggagaacgcgttgactgtgaatgaaggtcttgggggagtgataaaacctgacttcacaggatttcaccataaagcattttatgcatcaacctactttccacaagccttagacactgcagctttggtacagtaccttgttggtggaactgaattcgctttatcacaatcatcaaccaacaacatcagacgaggactggagacgctgcgtctcatagctgtcaagtattccactccaaacagtgttaacgggcgtttaccacattacttcaacgaggcagttatcaagagacttttaccaggctatgcgtacagcagtgtgtcccatccttccaatttatcttctgtaataccaacagggataaacgtaagggacttgaatctgccacaaacgcaaatgtttttgcggttatacacgtataacgacacatctgtgaacgagttcttggaagatggaaaagcaaacaagggcaagtactatccaaacagtttgggatctctggacatcatgaataaagtaaactccactgctgtttctcaaggtatatctcccgaaccatcccctgaaggacattggtccaaaaactttgccgctctatcagtccatcgacgtaaggattgggcggtgacggtgaagggattcaatcgtttcctgtgggactacgaaagttcaaaaagcgaaaatatttatggcttatttgccagtcacggtgcgctcctgattgcaaacagtgaaagacatcttcaggtacatgacgtcgagcacggatga

Transcript

evm.model.Ap2.3361

ATGTTTATCTTCCTTGTGTTACAAGTTTGTTACCTGCTGTTGAAAGCTGAACCAATACTTCCGTCAGGTAAATCTCCATGTCTTCATGACAAACTTTTTGACTTTGAGGATCCAAATCAGAAAAGCTGCTTTGAACTTGTTCCAAAATCATCGGGATCAGTGGACCTCTCAACTGACATCCTGACCGTTAAGCATGGAAACAGTTCACTCATGTGGAAAGCAGATACTGCCTCAAAGCTGCAACTAAAAGCATCAACCTTCAGCATTCCTAATGACTGGCTTAAACGTGGCGGCGTTAAAGTCTGGTTCTACAAGGAAAAGGCCTCGCCAGGAAAAACATTAGAAGTGGAATACGAACATTCCTCCAAAATTGTCGCCAAGTTCAAAGCGAATCTTAATTTTCAAGGATGGAGAGGAATTTGGGTGAAATTCTCAGAGTGCAAGATAAAACGTAAGGTAACGAAACGCACTGTCATCGACAAAGTTAACTTTGTTCTAAGCGATAAAGACACTATCTACATGGACTTGCTCGGGTTTGAGAAAAGCTTTGGTGAACAGTCACGTGACAAGGTAGTTCCTCCAATCAGTCCGTTTGGCTTGGCGGTGTATGACGCGAGCAACACTTGGCAGCGGACTTACAAGTGGAGTCAAGAACCCATTCCTGAGTCACCTTTGACAATTGACGAAAAAAAGAAGGAGAGTTTGGAACATATTGAAAGCCGGCTGAGGAACTGGTACTGTGACGAGACAAAAACGACTTCGAACTTCCCAGAAGACAGCTTTCTGAAGAAAAGTAAAGCTGAGAAGAGGAAAAAGTTTGGATTTATCACGGGAACTATCCTTCTACCTCTCGCCTTGGAATATCACCTAAGATCGCGAGCGAATGAAGTAACAGATGCTGCTATAAGCCAACTACCCGAGCTTAATTCCGGGGACCCAGACAAGATACAAAACGCTTGTATTGCCATTGCAGGTAAAAATGAAAATATGCAAATGATATTTAAGAACTACTTGCCTAGTTCAAAAACACTGACACTAGGTCAAGTGGAGATTGCAATAAACACTTTAAACCTGGATCGACTAAACAAAATAAACAACCTTCTTGACTTTTTAAAGCAACAAGGATTTGCAGATGGCAGTGGCCTCGGATCATTGAACCACGAATGGAACAGAGATGGCGCTGGATTCACGCACACACTGTTCCTTATAAGTGAATCTTTAAAACTTCCTTCCAACAAAAGCAGATTGCTGGATTTGATAAACACAGCCAAGTGGTACAACGACTTTGGAGAAATTTATCAATCGCCAAAATTCGAATTCAAAGGAACGACTGCTGACCGTATGATCACACTAATGCTATACAGACTTATGATTGTACTGGTGATGCCAAGTGATAACGATGAAGAAATCAAAGCCAAACTCCGGGACATGGAAGCTTTAAAAAGGTGGATGGAGAACGCGTTGACTGTGAATGAAGGTCTTGGGGGAGTGATAAAACCTGACTTCACAGGATTTCACCATAAAGCATTTTATGCATCAACCTACTTTCCACAAGCCTTAGACACTGCAGCTTTGGTACAGTACCTTGTTGGTGGAACTGAATTCGCTTTATCACAATCATCAACCAACAACATCAGACGAGGACTGGAGACGCTGCGTCTCATAGCTGTCAAGTATTCCACTCCAAACAGTGTTAACGGGCGTTTACCACATTACTTCAACGAGGCAGTTATCAAGAGACTTTTACCAGGCTATGCGTACAGCAGTGTGTCCCATCCTTCCAATTTATCTTCTGTAATACCAACAGGGATAAACGTAAGGGACTTGAATCTGCCACAAACGCAAATGTTTTTGCGGTTATACACGTATAACGACACATCTGTGAACGAGTTCTTGGAAGATGGAAAAGCAAACAAGGGCAAGTACTATCCAAACAGTTTGGGATCTCTGGACATCATGAATAAAGTAAACTCCACTGCTGTTTCTCAAGGTATATCTCCCGAACCATCCCCTGAAGGACATTGGTCCAAAAACTTTGCCGCTCTATCAGTCCATCGACGTAAGGATTGGGCGGTGACGGTGAAGGGATTCAATCGTTTCCTGTGGGACTACGAAAGTTCAAAAAGCGAAAATATTTATGGCTTATTTGCCAGTCACGGTGCGCTCCTGATTGCAAACAGTGAAAGACATCTTCAGGTACATGACGTCGAGCACGGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09092	Lyase_N	Lyase, N terminal	Domain	Interproscan
PF09093	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015176	Domain	Lyase, N-terminal	Interproscan
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR014718	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR008929	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR039174	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR015177	Domain	Lyase, catalytic	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0006027	Biological Process	glycosaminoglycan catabolic process	Interproscan