Gene detail

Detailed information of evm.model.Ap3.1071 in Astrangia poculata

Genomic Location: Ap3:11841417...11854707
NR annotation: XP_027046792.1, mediator of RNA polymerase II transcription subunit 16-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q566H4	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus laevis OX=8355 GN=med16 PE=2 SV=1
Q08D69	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus tropicalis OX=8364 GN=med16 PE=2 SV=1
Q6PGF3	Mediator of RNA polymerase II transcription subunit 16 OS=Mus musculus OX=10090 GN=Med16 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11635	Med16_N	Mediator complex subunit 16, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR021665	Domain	Mediator complex, subunit Med16, N-terminal	Interproscan
IPR048338	Family	Mediator complex, subunit Med16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14548	UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4	-	Ribosome biogenesis	ko03009	deepkoala