Gene detail

Detailed information of evm.model.Ap3.119 in Astrangia poculata

Genomic Location: Ap3:1176088...1185179
NR annotation: XP_020619093.1, microprocessor complex subunit DGCR8-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap3.119

atgcaagatgatggggaacaattatgcgccacgggtttggatgattcccgtcctttgtcagcaccggttactgaagaatcccttgaaacaacgacactacaattagaaagagtaccattgaaaagaaagtcagacgaagagctggggagcaagcaaaaacgccgccttgtgacagaggaaactcaaagcagtgacgaaaacactttgatgtcgacagagaatacaggcacggaggaagagaacggcagtgaagaaagagaaatgtgcgagccttcagagccagagcgaagagtaatcattatgaagggtaatttgccaaaattggctttaccagatggctggatagcacttaatcataggagtggtggaattatctatctccacaaaccaacaagagtggtaacctggtctcgtccttatcacattggaggtggaagtgttaggaaacatgatgtaccactggctgccattccatgccttcatcagagaagaggattagccatggaaaaagagaaaagtgaaggtacaagttcagaggagaacaactctagttccagtcttgtaaactatggaggctcaattttaaatacacttaatacgggtgagaagaatacggaggaagcaactccaaatgagattgtcattacagagcacacttccgttggagaggggcatgaacaaagtggattggatgttatcatgaacctaactgatataaatggcgttactgatacaaattgcgtgactgatgcaaatggcgtgacagagaaaaatgacgtgacggagaagagagccgtgacagttaggagtgaggcaagagtgcttaatggtgtgatggaagtagatgctgtgacagaaagtaacggtatgaccgaaagatgtgatgtgacagaccaaagtaacgtaacacaacattcacaagttgcagaggattctgactcttctgatggtcaagaaagttcagggcaaaaggctgtttcaaaaccagaagaacccgctaacaatggcagtagcagtactagcatagagttaatagatgctggagaactgggcacttacttatcaagtatttgggagtttcaagctcttacctcagaccaagaacgctacgctgtgatagcgcaaccgcaagctgttgacaatcttgaattaccagcatcgttagaatgccagccatatgctgttaaaggcactgaaaacaagaagcagcaaggcaaagaatgtttgctgaacgctggcgggaaaaccccagtggcaattttacacgaatactgccagcgagtattgaagacaaaacctgtgtacctgtccagtgaatgcgagaatgctgatactccgtttttggcagaggtccagatagatgaaatcaaatatggatcaggaattggctccagtaagaaacttgctcgacagattgctgctgaatgcacactggaagtgttgttacctggagtttacaagaaaatacgtgattaccagatttcagaagccgagctagagttttttgacaaagtagacatcttggatccgcgtcttcctgagttttgttcaaagacaaccctccctaacccttcgcaaatcctcgaggagtgtttaaagagaaaccaaggcatttgttcatctccgatccagttcactaccgtctgcggacaggacagaagcctgtcatttcatataacatgcggcaaacacacagcaacgggtccatgtaaaaacaaacgacttggcaagcagctggcctcacaacaaatcttaaagaaacttcatcctcatcttgaaaagtggggagcgctgattagaatctactgtgacagaccttcgggctccattaaaaagtacaaaaaagatgaaagtaaatctaccggcgagcgagaaaacggctctgatatgctccagaatagcgatttgctggggcggctcaaaactgaaatgagaaaacttcgttttgaggttgagaaagctaaaagcacggattgcagaaagaactcggcagagcctgtgttcactgtggacatgtaa

Transcript

evm.model.Ap3.119

ATGCAAGATGATGGGGAACAATTATGCGCCACGGGTTTGGATGATTCCCGTCCTTTGTCAGCACCGGTTACTGAAGAATCCCTTGAAACAACGACACTACAATTAGAAAGAGTACCATTGAAAAGAAAGTCAGACGAAGAGCTGGGGAGCAAGCAAAAACGCCGCCTTGTGACAGAGGAAACTCAAAGCAGTGACGAAAACACTTTGATGTCGACAGAGAATACAGGCACGGAGGAAGAGAACGGCAGTGAAGAAAGAGAAATGTGCGAGCCTTCAGAGCCAGAGCGAAGAGTAATCATTATGAAGGGTAATTTGCCAAAATTGGCTTTACCAGATGGCTGGATAGCACTTAATCATAGGAGTGGTGGAATTATCTATCTCCACAAACCAACAAGAGTGGTAACCTGGTCTCGTCCTTATCACATTGGAGGTGGAAGTGTTAGGAAACATGATGTACCACTGGCTGCCATTCCATGCCTTCATCAGAGAAGAGGATTAGCCATGGAAAAAGAGAAAAGTGAAGGTACAAGTTCAGAGGAGAACAACTCTAGTTCCAGTCTTGTAAACTATGGAGGCTCAATTTTAAATACACTTAATACGGGTGAGAAGAATACGGAGGAAGCAACTCCAAATGAGATTGTCATTACAGAGCACACTTCCGTTGGAGAGGGGCATGAACAAAGTGGATTGGATGTTATCATGAACCTAACTGATATAAATGGCGTTACTGATACAAATTGCGTGACTGATGCAAATGGCGTGACAGAGAAAAATGACGTGACGGAGAAGAGAGCCGTGACAGTTAGGAGTGAGGCAAGAGTGCTTAATGGTGTGATGGAAGTAGATGCTGTGACAGAAAGTAACGGTATGACCGAAAGATGTGATGTGACAGACCAAAGTAACGTAACACAACATTCACAAGTTGCAGAGGATTCTGACTCTTCTGATGGTCAAGAAAGTTCAGGGCAAAAGGCTGTTTCAAAACCAGAAGAACCCGCTAACAATGGCAGTAGCAGTACTAGCATAGAGTTAATAGATGCTGGAGAACTGGGCACTTACTTATCAAGTATTTGGGAGTTTCAAGCTCTTACCTCAGACCAAGAACGCTACGCTGTGATAGCGCAACCGCAAGCTGTTGACAATCTTGAATTACCAGCATCGTTAGAATGCCAGCCATATGCTGTTAAAGGCACTGAAAACAAGAAGCAGCAAGGCAAAGAATGTTTGCTGAACGCTGGCGGGAAAACCCCAGTGGCAATTTTACACGAATACTGCCAGCGAGTATTGAAGACAAAACCTGTGTACCTGTCCAGTGAATGCGAGAATGCTGATACTCCGTTTTTGGCAGAGGTCCAGATAGATGAAATCAAATATGGATCAGGAATTGGCTCCAGTAAGAAACTTGCTCGACAGATTGCTGCTGAATGCACACTGGAAGTGTTGTTACCTGGAGTTTACAAGAAAATACGTGATTACCAGATTTCAGAAGCCGAGCTAGAGTTTTTTGACAAAGTAGACATCTTGGATCCGCGTCTTCCTGAGTTTTGTTCAAAGACAACCCTCCCTAACCCTTCGCAAATCCTCGAGGAGTGTTTAAAGAGAAACCAAGGCATTTGTTCATCTCCGATCCAGTTCACTACCGTCTGCGGACAGGACAGAAGCCTGTCATTTCATATAACATGCGGCAAACACACAGCAACGGGTCCATGTAAAAACAAACGACTTGGCAAGCAGCTGGCCTCACAACAAATCTTAAAGAAACTTCATCCTCATCTTGAAAAGTGGGGAGCGCTGATTAGAATCTACTGTGACAGACCTTCGGGCTCCATTAAAAAGTACAAAAAAGATGAAAGTAAATCTACCGGCGAGCGAGAAAACGGCTCTGATATGCTCCAGAATAGCGATTTGCTGGGGCGGCTCAAAACTGAAATGAGAAAACTTCGTTTTGAGGTTGAGAAAGCTAAAAGCACGGATTGCAGAAAGAACTCGGCAGAGCCTGTGTTCACTGTGGACATGTAA

Protein

Uniprot

Uniprot term	Description
Q9EQM6	Microprocessor complex subunit DGCR8 OS=Mus musculus OX=10090 GN=Dgcr8 PE=1 SV=2
Q8WYQ5	Microprocessor complex subunit DGCR8 OS=Homo sapiens OX=9606 GN=DGCR8 PE=1 SV=1
A6QR44	Microprocessor complex subunit DGCR8 OS=Bos taurus OX=9913 GN=DGCR8 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040375	Family	Microprocessor complex subunit DGCR8	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR001202	Domain	WW domain	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13482	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0031053	Biological Process	primary miRNA processing	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0070877	Cellular Component	microprocessor complex	Interproscan
GO:0070878	Molecular Function	primary miRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18419	DCGR8; microprocessor complex subunit DGCR8	-	Chromosome and associated proteins	ko03036	deepkoala