Gene detail

Detailed information of evm.model.Ap3.1211 in Astrangia poculata

Genomic Location: Ap3:13300507...13306510
NR annotation: KAJ7378729.1, Histone-lysine N-methyltransferase setd1b [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap3.1211

atgaaggaagcgtaccagttcgcaaaggttcatgggaatattgtcacgcgtgtgtggttggatgaagtagtgaatggtctatcgagatcactgccccgttttgaagagaatgtccagagagaagatttcaaacttctgatagatcccgccataaagaaaggacatgctaaaatctacagatacaatggagtatttccagggcaaccaccggttgtcccaaaggaccctcgctccaggagaacgagaatatggactctcaacaaagccgatttaccagttcctaatttcaaggtggacaagtggtatgtaggaattcctccacaacgcgaagtccacttttcaggattaaatgacaatgtggacaagaagtttctacaagagatgtgtgaacgctatgggcgaatcgatgccatcaaaatatactatgatccacaaacaaagaaacacaccggaaaggcacgtgtgacttttgctactaccaccgctgctaaattgacagtttctaaattggatcacacttcagtaatgggaaacatcataaaggcacagatcgatccaaatatcaaaggacatgacattcatggcaaacttcctccagcaagacgaaattcaggccacgagagctgtcccacccctacttctcattcctcaactcacttgccaactccatcaccttccatgatatcacagtcatcatctgcagatggttcagtgatatcaccttcactactgctgatgaaaagtcctgcatcatcagtgcgacttccagcagatgtttggggagtgtcacttagtaactcatgggacaggacaacagcaggtgccaacaagttgcctcagagtggttcagcctttatgtccccacaaagtgtgtcatctgcacagtctacatttgaaccagtctcaccgccacatgtttttcacaagaatgacgagcccccaccacctccaccaccaagctcaaatccaccaccaccaccagtggagagaagttcatctaaagagaccccaccaccaccccctaatgagaaatctggtacagctccttgcataaagtatgaagacatatctcctgatcctgtattttcccctagagatgaagacaagtcagcctctactcacaaagacaaggatgatgtcaagacaattaccaagcttattgaatcatgtagaagagagtccacacatacttcgtcacctcctagcaaaactagatcacctcgcattgacagaagtgagagttacacaaaatgggaaagaaggaaacagatggaacgagaggagagacatcgtgacaaatacagagactctgataggcatggtggaggcaatgatagggatcatggttataaagatgatcgaaggtttgacaagcatggagactatagacataaacaggatgataaaaaagttgataagagagacaattacagatgggatgattatgacagaaacagaagtggaggtcagtacagggacaaggatgattacaaatatagaaaagatagagataggtatagtacaagtccaaggagaggggatgaccgtagaaggtcagatttacgaaatagagatcctagattgcgggacagagatagtgaaagtggcgatggaaaagaggtacatagtaaaagactgaacgaaagagataaagagggacataatggagaagatgaccgctgtcgtgatccaagattaaaaggaagaaatatggaaacttctgatatttacactagagataagaaagtgaaagaacggcagaatgaaggaggaagttccagtttcagttccagttccaaggagcctaaaatggtggacagtgaaaataaaatgtcagacaaagacagagagaataatacatccgagtcgaaaatcaaagatcccagattgcaaggaagggataatgaacaaaaaagtatttatgcatctgcacagaatgtcagtagcaaagacacttctgatcaagagcagaaaaataacacagttgaagatgaagatcatgagtcaagaacagatttagcaaaagatgaaagtgtcactaaaaatgcaagtgcagcagagattatttcatctgtggtagctggtgcttcactgggggaaacaaaagcaataaatagatactcagaggggtgcaaaaagttggtgtggaagcttgttctgatgaaggggccattacctccccccgtggcgtattttctcatgaagtacaattag

Transcript

evm.model.Ap3.1211

ATGAAGGAAGCGTACCAGTTCGCAAAGGTTCATGGGAATATTGTCACGCGTGTGTGGTTGGATGAAGTAGTGAATGGTCTATCGAGATCACTGCCCCGTTTTGAAGAGAATGTCCAGAGAGAAGATTTCAAACTTCTGATAGATCCCGCCATAAAGAAAGGACATGCTAAAATCTACAGATACAATGGAGTATTTCCAGGGCAACCACCGGTTGTCCCAAAGGACCCTCGCTCCAGGAGAACGAGAATATGGACTCTCAACAAAGCCGATTTACCAGTTCCTAATTTCAAGGTGGACAAGTGGTATGTAGGAATTCCTCCACAACGCGAAGTCCACTTTTCAGGATTAAATGACAATGTGGACAAGAAGTTTCTACAAGAGATGTGTGAACGCTATGGGCGAATCGATGCCATCAAAATATACTATGATCCACAAACAAAGAAACACACCGGAAAGGCACGTGTGACTTTTGCTACTACCACCGCTGCTAAATTGACAGTTTCTAAATTGGATCACACTTCAGTAATGGGAAACATCATAAAGGCACAGATCGATCCAAATATCAAAGGACATGACATTCATGGCAAACTTCCTCCAGCAAGACGAAATTCAGGCCACGAGAGCTGTCCCACCCCTACTTCTCATTCCTCAACTCACTTGCCAACTCCATCACCTTCCATGATATCACAGTCATCATCTGCAGATGGTTCAGTGATATCACCTTCACTACTGCTGATGAAAAGTCCTGCATCATCAGTGCGACTTCCAGCAGATGTTTGGGGAGTGTCACTTAGTAACTCATGGGACAGGACAACAGCAGGTGCCAACAAGTTGCCTCAGAGTGGTTCAGCCTTTATGTCCCCACAAAGTGTGTCATCTGCACAGTCTACATTTGAACCAGTCTCACCGCCACATGTTTTTCACAAGAATGACGAGCCCCCACCACCTCCACCACCAAGCTCAAATCCACCACCACCACCAGTGGAGAGAAGTTCATCTAAAGAGACCCCACCACCACCCCCTAATGAGAAATCTGGTACAGCTCCTTGCATAAAGTATGAAGACATATCTCCTGATCCTGTATTTTCCCCTAGAGATGAAGACAAGTCAGCCTCTACTCACAAAGACAAGGATGATGTCAAGACAATTACCAAGCTTATTGAATCATGTAGAAGAGAGTCCACACATACTTCGTCACCTCCTAGCAAAACTAGATCACCTCGCATTGACAGAAGTGAGAGTTACACAAAATGGGAAAGAAGGAAACAGATGGAACGAGAGGAGAGACATCGTGACAAATACAGAGACTCTGATAGGCATGGTGGAGGCAATGATAGGGATCATGGTTATAAAGATGATCGAAGGTTTGACAAGCATGGAGACTATAGACATAAACAGGATGATAAAAAAGTTGATAAGAGAGACAATTACAGATGGGATGATTATGACAGAAACAGAAGTGGAGGTCAGTACAGGGACAAGGATGATTACAAATATAGAAAAGATAGAGATAGGTATAGTACAAGTCCAAGGAGAGGGGATGACCGTAGAAGGTCAGATTTACGAAATAGAGATCCTAGATTGCGGGACAGAGATAGTGAAAGTGGCGATGGAAAAGAGGTACATAGTAAAAGACTGAACGAAAGAGATAAAGAGGGACATAATGGAGAAGATGACCGCTGTCGTGATCCAAGATTAAAAGGAAGAAATATGGAAACTTCTGATATTTACACTAGAGATAAGAAAGTGAAAGAACGGCAGAATGAAGGAGGAAGTTCCAGTTTCAGTTCCAGTTCCAAGGAGCCTAAAATGGTGGACAGTGAAAATAAAATGTCAGACAAAGACAGAGAGAATAATACATCCGAGTCGAAAATCAAAGATCCCAGATTGCAAGGAAGGGATAATGAACAAAAAAGTATTTATGCATCTGCACAGAATGTCAGTAGCAAAGACACTTCTGATCAAGAGCAGAAAAATAACACAGTTGAAGATGAAGATCATGAGTCAAGAACAGATTTAGCAAAAGATGAAAGTGTCACTAAAAATGCAAGTGCAGCAGAGATTATTTCATCTGTGGTAGCTGGTGCTTCACTGGGGGAAACAAAAGCAATAAATAGATACTCAGAGGGGTGCAAAAAGTTGGTGTGGAAGCTTGTTCTGATGAAGGGGCCATTACCTCCCCCCGTGGCGTATTTTCTCATGAAGTACAATTAG

Protein

Uniprot

Uniprot term	Description
Q1LY77	Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio OX=7955 GN=setd1ba PE=1 SV=2
Q8CFT2	Histone-lysine N-methyltransferase SETD1B OS=Mus musculus OX=10090 GN=Setd1b PE=1 SV=2
Q66J90	Histone-lysine N-methyltransferase SETD1B OS=Xenopus laevis OX=8355 GN=setd1b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR044570	Family	Histone-lysine N-methyltransferase Set1-like	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45814	HISTONE-LYSINE N-METHYLTRANSFERASE SETD1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0042800	Molecular Function	histone H3K4 methyltransferase activity	Interproscan
GO:0048188	Cellular Component	Set1C/COMPASS complex	Interproscan
GO:0051568	Biological Process	obsolete histone H3-K4 methylation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan