Gene detail

Detailed information of evm.model.Ap3.48 in Astrangia poculata

Genomic Location: Ap3:518609...524696
NR annotation: XP_027036667.1, mitochondrial RNA pseudouridine synthase RPUSD4-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5E9Z1	Pseudouridylate synthase RPUSD4, mitochondrial OS=Bos taurus OX=9913 GN=RPUSD4 PE=2 SV=1
Q4QQT0	Pseudouridylate synthase RPUSD4, mitochondrial OS=Rattus norvegicus OX=10116 GN=Rpusd4 PE=2 SV=1
Q9CWX4	Pseudouridylate synthase RPUSD4, mitochondrial OS=Mus musculus OX=10090 GN=Rpusd4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22538	RPUSD4; mitochondrial RNA pseudouridine synthase RPUSD4	EC:5.4.99.-	Mitochondrial biogenesis	ko03029	deepkoala