Gene detail

Detailed information of evm.model.Ap3.764 in Astrangia poculata

Genomic Location: Ap3:8220165...8233992
NR annotation: XP_020613569.1, E3 ubiquitin-protein ligase RNF25-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap3.764

atggcggccggccctgcggccacagatcatggagatggcagttattcccttgaagaggagattgaattattggaagctatttacattcacgagttaaccctcgaagggcctcgcgagagacctatagctgtcagtgttctgcttcatccaagcacaggagatgaagaacacaagcgctttgtgtgtcttacattagttattgatcttcctgataagtatccatcagaactgccatccattcacatcaagactcccaggggactatctgaagctcatattgaaagcattttggcaaacctgagagaacttgcagagggttgtcttggaagacctatgctgtatgaacttattgagtatgccaaggagagcttaactgacaacaacacacccagctgtgcctgtgcaatctgtctttgccactttcaggataatcatgaattcaccaagacagagtgttaccattattttcactgtggctgcttagcaaggtacatagaattttcacttcaactagaaaaggaaactgaagacagcacaaaggtggaatgccccatgtgccgactgccaatcacatacaacctcacagaactcaagactgttgcttcaagtgaggggaatgaggagcaggtggcttacaagcccagtgtggaaataaggaaacttcagaagaaaatgtcttcaatgtttgacaaacaaaaacgaaaaggcggagtcattgacgtggaacaagaaaggaacagatatttaattgatataacatcggttcgtcaagaggaaactgttcctgaaagcgagccccccacagggcccgagacggacacagtaacaaagaatcctacaacggaacacactgtaaatgtccctaaggcagtagacgcagttaaggcaattagtcaaccagacgatgtaagccgcaaagacaaacaagtgaagtcagataaaaaagacttttcgaaatactcgggaccctcgcggagtcctgggcgccccatagacaaaactggaaatcgatggggtgaagagaagtttaaacagaatggcccgagaagaactgagaagaaacgccctactacatctgacaggcctaaaagtaccgagcagacggaaaaagagaaacaatcagcgaaagagcctgacaagcaagaaagtgattttgcaattagggcggaagctaaacctgatagcgctccgacagggctgaaatcggagaaaaacacttctgttgtagaccctcaagggaaggttgaaagaggcgtttctagcagcagcaataatagcagttcatcgcacatttctaatacagaaaggccaagaactggtaggaggggtcgagggaggtcgggaagaggcaggcctcctcctggcagcgcaaacgaatcccgagacggtgagaagagagaaaaagaaaaagaatctgcgagagaacctgacaagcaagagagtgattttgcaattaggggagaagctgaacctgatagcgctcagacagagttgaaatccgagaaaaacacttccgttgtcgaccctccagagaaggttgaaagaagcgtttctggtggcagcaataatagcaattcaagacaaaattataatggcgaaaggccaagatctgccaggagaggtcgtggtaggttggaaagaggcaggccacctcctggccgcgtcaacgaaccccgagacggcgccaaggatatgaataaaagtgggacttcttcccgagaagctttcaaacgctctgacatggctgggccatccgaaaatagcaagccaccccttgagaaaaatggtggtcctcaagaccaaagaaattctgttcaagaaaatcctaccaacgaggggggacgttacagtaagaacaaaaaggtttgcaagcctcccccaggttttacgaatttgaagactgatgaagggggatgcgaagagtctacaaatgcgaattctcgaccccctcccgggtttgaacaacattctacccgacctagacctcctccagggcttggtaacctagcggaaggggcagggcagaacacgagtcaatcattagcaagttaa

Transcript

evm.model.Ap3.764

ATGGCGGCCGGCCCTGCGGCCACAGATCATGGAGATGGCAGTTATTCCCTTGAAGAGGAGATTGAATTATTGGAAGCTATTTACATTCACGAGTTAACCCTCGAAGGGCCTCGCGAGAGACCTATAGCTGTCAGTGTTCTGCTTCATCCAAGCACAGGAGATGAAGAACACAAGCGCTTTGTGTGTCTTACATTAGTTATTGATCTTCCTGATAAGTATCCATCAGAACTGCCATCCATTCACATCAAGACTCCCAGGGGACTATCTGAAGCTCATATTGAAAGCATTTTGGCAAACCTGAGAGAACTTGCAGAGGGTTGTCTTGGAAGACCTATGCTGTATGAACTTATTGAGTATGCCAAGGAGAGCTTAACTGACAACAACACACCCAGCTGTGCCTGTGCAATCTGTCTTTGCCACTTTCAGGATAATCATGAATTCACCAAGACAGAGTGTTACCATTATTTTCACTGTGGCTGCTTAGCAAGGTACATAGAATTTTCACTTCAACTAGAAAAGGAAACTGAAGACAGCACAAAGGTGGAATGCCCCATGTGCCGACTGCCAATCACATACAACCTCACAGAACTCAAGACTGTTGCTTCAAGTGAGGGGAATGAGGAGCAGGTGGCTTACAAGCCCAGTGTGGAAATAAGGAAACTTCAGAAGAAAATGTCTTCAATGTTTGACAAACAAAAACGAAAAGGCGGAGTCATTGACGTGGAACAAGAAAGGAACAGATATTTAATTGATATAACATCGGTTCGTCAAGAGGAAACTGTTCCTGAAAGCGAGCCCCCCACAGGGCCCGAGACGGACACAGTAACAAAGAATCCTACAACGGAACACACTGTAAATGTCCCTAAGGCAGTAGACGCAGTTAAGGCAATTAGTCAACCAGACGATGTAAGCCGCAAAGACAAACAAGTGAAGTCAGATAAAAAAGACTTTTCGAAATACTCGGGACCCTCGCGGAGTCCTGGGCGCCCCATAGACAAAACTGGAAATCGATGGGGTGAAGAGAAGTTTAAACAGAATGGCCCGAGAAGAACTGAGAAGAAACGCCCTACTACATCTGACAGGCCTAAAAGTACCGAGCAGACGGAAAAAGAGAAACAATCAGCGAAAGAGCCTGACAAGCAAGAAAGTGATTTTGCAATTAGGGCGGAAGCTAAACCTGATAGCGCTCCGACAGGGCTGAAATCGGAGAAAAACACTTCTGTTGTAGACCCTCAAGGGAAGGTTGAAAGAGGCGTTTCTAGCAGCAGCAATAATAGCAGTTCATCGCACATTTCTAATACAGAAAGGCCAAGAACTGGTAGGAGGGGTCGAGGGAGGTCGGGAAGAGGCAGGCCTCCTCCTGGCAGCGCAAACGAATCCCGAGACGGTGAGAAGAGAGAAAAAGAAAAAGAATCTGCGAGAGAACCTGACAAGCAAGAGAGTGATTTTGCAATTAGGGGAGAAGCTGAACCTGATAGCGCTCAGACAGAGTTGAAATCCGAGAAAAACACTTCCGTTGTCGACCCTCCAGAGAAGGTTGAAAGAAGCGTTTCTGGTGGCAGCAATAATAGCAATTCAAGACAAAATTATAATGGCGAAAGGCCAAGATCTGCCAGGAGAGGTCGTGGTAGGTTGGAAAGAGGCAGGCCACCTCCTGGCCGCGTCAACGAACCCCGAGACGGCGCCAAGGATATGAATAAAAGTGGGACTTCTTCCCGAGAAGCTTTCAAACGCTCTGACATGGCTGGGCCATCCGAAAATAGCAAGCCACCCCTTGAGAAAAATGGTGGTCCTCAAGACCAAAGAAATTCTGTTCAAGAAAATCCTACCAACGAGGGGGGACGTTACAGTAAGAACAAAAAGGTTTGCAAGCCTCCCCCAGGTTTTACGAATTTGAAGACTGATGAAGGGGGATGCGAAGAGTCTACAAATGCGAATTCTCGACCCCCTCCCGGGTTTGAACAACATTCTACCCGACCTAGACCTCCTCCAGGGCTTGGTAACCTAGCGGAAGGGGCAGGGCAGAACACGAGTCAATCATTAGCAAGTTAA

Protein

Uniprot

Uniprot term	Description
Q9QZR0	E3 ubiquitin-protein ligase RNF25 OS=Mus musculus OX=10090 GN=Rnf25 PE=1 SV=2
Q96BH1	E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens OX=9606 GN=RNF25 PE=1 SV=1
Q5E9N3	E3 ubiquitin-protein ligase RNF25 OS=Bos taurus OX=9913 GN=RNF25 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039133	Family	E3 ubiquitin-protein ligase RNF25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13198	RING FINGER PROTEIN 25	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10640	RNF25, AO7; E3 ubiquitin-protein ligase RNF25	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala