Gene detail

Detailed information of evm.model.Ap4.3918 in Astrangia poculata

Genomic Location: Ap4:28922790...28925717
NR annotation: XP_044178265.1, uncharacterized protein K02A2.6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap4.3918

atggaaagagatcagaatcttgaaagaacattacaagccgcctgtatctcggaaacaagtaaacaacacatgaagactttaaaggacgagagcagcaaagtcgagaaagtggattcagtagacggttcaggtcgtaagcatcaaggtggtatggcctgcaggaactgtggtattttgcatgggcttgggagaggtttatgccctgcagctggtaaacaatgccacaagttcaactcgggggaccaagactgggttgaaacagtagattttggcaatgttaaagaggtgtttaagctagacactggtgcccagtgtaatgttttgccaaaaactgtgtatgacaagatcacaactatgcctttgctaccatcctctgcaagactagaaagttattcgaagacttctatagaaccagttggaaaatgtgagttgacatgttgtgtgcgggggcagaaacatcaagtcttatttcaagtagtagatggcagttatactcccctcctaggtcgggcttcctgtgaacagatgggtctaatacaacgcataaacactatcagtagcagaagtatcctggatgaattttcagacgtattccaaggaagagttcctcactcaaaacgggacccattgaaaaaagagctagaccgcatggaaagtgttggcataattgagaaagtgcccttaaatgaaccagcagattgggttagcagtcttgtgtgtgttgataaaccagatgggtccattcgggagtgccttgatccaagggatcttaacaaagccattaagagggaacattacccacttccattagtggaagatatcacagccagttgcgcaggagctacattgttttcaaccttggatgctgaaaaggctttctaccaaattcagttggatgaggagagtagcaaacttttgacatttaatacacctttcgggaggtatcgtttcctgaggatgccaatgggtatcaagtctgccccagaagtgtaccaatgcagaatggagcaagtgttcgaagggctcacaggagtcaaagttatcatggatgacataatttcgcatggaagcagcaaggaagaacatgatacccatctgagggctaggataccagggtttctcatccatgaggaatataagctggggaaacttaacaccactggagaggaatacaaaacctgttttgctcaggtagatgccttctttgatgaggagaatcgttccttcgagttctcggagtggaatgttcacgtgcacaggcgaaccattaaagtagtgacaatctatcgacccccgtactcggacgaccatcctgttccttcacacgtgttcttcgatgaattttcatcgtatctggagaacattgttatggcccccgaggtgctgctgatcacgggtgattttaactttcacatcgactgctcgtccaacgcggatgccaagaagtttgcggatttacttgatacttttggacttatccaacatgtccatgtaccaactcactcatcaggacatacgctggacctggttatcactagatcaaccaatgatgtcacgatcacctctcctcttacgacctttgctctgtcggatcactcttttgtcgagtgtttgttggatattcctcgccctaacatctctgtgagtgaaatccactatcgcaagcttaaacagattgaccttgaggtcttcaaagctgacatatctgcttctgaactttgcaacgcaacatggtcaagtgttgacgaaatggctaaatgttatgatgacaccttacgttctattcttgacaagcatgcccctctgaagacgaaagtcatggctgttagacctataatgccatggtttaatgacaatctcaaaaagctgaaggctaagcgtaggaagcttgaaagggcgatgattaaatcgggacttcagtgtgacaaggatgcttatcgtaaaaacgtgcgccacagtactcttctaaaagaaaccagaaaaaaagtttccgtaacttga

Transcript

evm.model.Ap4.3918

ATGGAAAGAGATCAGAATCTTGAAAGAACATTACAAGCCGCCTGTATCTCGGAAACAAGTAAACAACACATGAAGACTTTAAAGGACGAGAGCAGCAAAGTCGAGAAAGTGGATTCAGTAGACGGTTCAGGTCGTAAGCATCAAGGTGGTATGGCCTGCAGGAACTGTGGTATTTTGCATGGGCTTGGGAGAGGTTTATGCCCTGCAGCTGGTAAACAATGCCACAAGTTCAACTCGGGGGACCAAGACTGGGTTGAAACAGTAGATTTTGGCAATGTTAAAGAGGTGTTTAAGCTAGACACTGGTGCCCAGTGTAATGTTTTGCCAAAAACTGTGTATGACAAGATCACAACTATGCCTTTGCTACCATCCTCTGCAAGACTAGAAAGTTATTCGAAGACTTCTATAGAACCAGTTGGAAAATGTGAGTTGACATGTTGTGTGCGGGGGCAGAAACATCAAGTCTTATTTCAAGTAGTAGATGGCAGTTATACTCCCCTCCTAGGTCGGGCTTCCTGTGAACAGATGGGTCTAATACAACGCATAAACACTATCAGTAGCAGAAGTATCCTGGATGAATTTTCAGACGTATTCCAAGGAAGAGTTCCTCACTCAAAACGGGACCCATTGAAAAAAGAGCTAGACCGCATGGAAAGTGTTGGCATAATTGAGAAAGTGCCCTTAAATGAACCAGCAGATTGGGTTAGCAGTCTTGTGTGTGTTGATAAACCAGATGGGTCCATTCGGGAGTGCCTTGATCCAAGGGATCTTAACAAAGCCATTAAGAGGGAACATTACCCACTTCCATTAGTGGAAGATATCACAGCCAGTTGCGCAGGAGCTACATTGTTTTCAACCTTGGATGCTGAAAAGGCTTTCTACCAAATTCAGTTGGATGAGGAGAGTAGCAAACTTTTGACATTTAATACACCTTTCGGGAGGTATCGTTTCCTGAGGATGCCAATGGGTATCAAGTCTGCCCCAGAAGTGTACCAATGCAGAATGGAGCAAGTGTTCGAAGGGCTCACAGGAGTCAAAGTTATCATGGATGACATAATTTCGCATGGAAGCAGCAAGGAAGAACATGATACCCATCTGAGGGCTAGGATACCAGGGTTTCTCATCCATGAGGAATATAAGCTGGGGAAACTTAACACCACTGGAGAGGAATACAAAACCTGTTTTGCTCAGGTAGATGCCTTCTTTGATGAGGAGAATCGTTCCTTCGAGTTCTCGGAGTGGAATGTTCACGTGCACAGGCGAACCATTAAAGTAGTGACAATCTATCGACCCCCGTACTCGGACGACCATCCTGTTCCTTCACACGTGTTCTTCGATGAATTTTCATCGTATCTGGAGAACATTGTTATGGCCCCCGAGGTGCTGCTGATCACGGGTGATTTTAACTTTCACATCGACTGCTCGTCCAACGCGGATGCCAAGAAGTTTGCGGATTTACTTGATACTTTTGGACTTATCCAACATGTCCATGTACCAACTCACTCATCAGGACATACGCTGGACCTGGTTATCACTAGATCAACCAATGATGTCACGATCACCTCTCCTCTTACGACCTTTGCTCTGTCGGATCACTCTTTTGTCGAGTGTTTGTTGGATATTCCTCGCCCTAACATCTCTGTGAGTGAAATCCACTATCGCAAGCTTAAACAGATTGACCTTGAGGTCTTCAAAGCTGACATATCTGCTTCTGAACTTTGCAACGCAACATGGTCAAGTGTTGACGAAATGGCTAAATGTTATGATGACACCTTACGTTCTATTCTTGACAAGCATGCCCCTCTGAAGACGAAAGTCATGGCTGTTAGACCTATAATGCCATGGTTTAATGACAATCTCAAAAAGCTGAAGGCTAAGCGTAGGAAGCTTGAAAGGGCGATGATTAAATCGGGACTTCAGTGTGACAAGGATGCTTATCGTAAAAACGTGCGCCACAGTACTCTTCTAAAAGAAACCAGAAAAAAAGTTTCCGTAACTTGA

Protein

Uniprot

Uniprot term	Description
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1
P0CT35	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan