Gene detail

Detailed information of evm.model.Ap4.4734 in Astrangia poculata

Genomic Location: Ap4:33022692...33024863
NR annotation: XP_020622206.1, uncharacterized protein LOC110059822 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap4.4734

atgacttcaagaaggcagcaatctcgggtcgacggcacacttgaaagtgagttaccagacgagccagtcaatattcacggccatatcacagaggtcattgatattgtcgaagccctctctgacgacagcagtaaagcagtggcagcagtccttgtgagtggaattccaggaataggaaaaactactgttgctattcaagctggtcatcagctaaaaaacaagcgtggctgcatcgtcaagttttgttctttgagatttactcatgcagatgagaagaattgtgaactcatggaacacgaaagagaaagagatttaagagagattttgaacgtgtgtgtcccaggacatcatcagacaaatgagttccccagacatgttttactcaactggtgcaggcaacttaaacatgaggttatacttgttcttgacaatgcagaagatgcgatggaagacgatgtcggggactctttccttgaattgttaaaagagatgaggaagtgctcacagtctagactcaagttcctgattacttcaagacgttcagtaattgaccttacctctggtttgaacgttaagactgttaaattaggtcctttggatttagaagagagcattgaagttctaaagaatggtgctaaacttcaatctgtatctgagggcctgtacgataaactgcgacagatagctgcactttgtgagcatattccactggcacttcaactagcaggacctctgctttcagaggctgaatacactgtaaatgaacttataactgagctgaaaaatgacccaacaaaaacacttcgttgtgatcgtatgatggaaatagcttttgacaaacttaacgagtcgttacaacatgcattagtttgcctgtctgtttttgttagatcgtttgacagaaatgcagcaaaagcattattaggcgtcaattacgctacgcatttgacgaagttaaaagaaagatgcctgattcaaaaacaggacgaccgatacatcattcacttattaatcagaagtcatgcaagacacgtaggaagagcaaagtttccccagattctagctcatggccaacaatcttttcttgagtactttttggccctgatattgagaaacgcgaagacatttttgggaaaagatacttgtaaagacgcttttgacttatttaatgcagaaaggcttaattatgagtccactcttagagatgtcagcgacaagaagatcaggaactgtagagaactggaagatgttgtaaccgaatgtcggctggtggtaccttacttaggagcctgtgtccacataaagctgtatgatgacttcttaaaaggacttctgtattttgcccaaaagcaagaaaaagttctccaaaaagtagaaattttgtgcgtccttaatcacgaaggaaggaaacgtggttgtgcaaacaaacagtttcaagaagaagcaataaaattacatgatgaaaatgttcatttatttgaacagaacggtccgtctgaggtagtttatttgagtttttatggcagatatctcgtacattgtaatgaaaaagaagagggtcagcttgttttgaaaaaagcgctttccatttatgaagagcaaaaggttgaatctacatttattaagacgagagctctcagacaaatggggtttacttcagaagaaatgggaagtaccgaagaggcttgcgaaaactatttagaggcattacagcttctcaaggtccgttatggcattcacgtgtggactgcgtatacacataaagaggtgggagattattacttgcgcgtccaagaatttcccatggcagaagagaactaccagaaggcaattggcattttagaagatataaaaatagcggatcacaaagaggcagtatcgatctttcgaggtctgggactgtgctttgaaaagagtggaaagtttgacgaatcccgaaaaacgtatgaaaaggcaatcgatattgctgataatactatcgagggaaaccacagatggaaggttgagattaaaaccttcttagcattgcttctttacacaaattaccaagaagaagtcaatacagcaaacagaattgcgaatgaagctcttcaaatgggcaaaaaacttggaatgaaggattggcaaagaaaaaaagaacttgaagaaatgcagaaaaagcaacttcgatga

Transcript

evm.model.Ap4.4734

ATGACTTCAAGAAGGCAGCAATCTCGGGTCGACGGCACACTTGAAAGTGAGTTACCAGACGAGCCAGTCAATATTCACGGCCATATCACAGAGGTCATTGATATTGTCGAAGCCCTCTCTGACGACAGCAGTAAAGCAGTGGCAGCAGTCCTTGTGAGTGGAATTCCAGGAATAGGAAAAACTACTGTTGCTATTCAAGCTGGTCATCAGCTAAAAAACAAGCGTGGCTGCATCGTCAAGTTTTGTTCTTTGAGATTTACTCATGCAGATGAGAAGAATTGTGAACTCATGGAACACGAAAGAGAAAGAGATTTAAGAGAGATTTTGAACGTGTGTGTCCCAGGACATCATCAGACAAATGAGTTCCCCAGACATGTTTTACTCAACTGGTGCAGGCAACTTAAACATGAGGTTATACTTGTTCTTGACAATGCAGAAGATGCGATGGAAGACGATGTCGGGGACTCTTTCCTTGAATTGTTAAAAGAGATGAGGAAGTGCTCACAGTCTAGACTCAAGTTCCTGATTACTTCAAGACGTTCAGTAATTGACCTTACCTCTGGTTTGAACGTTAAGACTGTTAAATTAGGTCCTTTGGATTTAGAAGAGAGCATTGAAGTTCTAAAGAATGGTGCTAAACTTCAATCTGTATCTGAGGGCCTGTACGATAAACTGCGACAGATAGCTGCACTTTGTGAGCATATTCCACTGGCACTTCAACTAGCAGGACCTCTGCTTTCAGAGGCTGAATACACTGTAAATGAACTTATAACTGAGCTGAAAAATGACCCAACAAAAACACTTCGTTGTGATCGTATGATGGAAATAGCTTTTGACAAACTTAACGAGTCGTTACAACATGCATTAGTTTGCCTGTCTGTTTTTGTTAGATCGTTTGACAGAAATGCAGCAAAAGCATTATTAGGCGTCAATTACGCTACGCATTTGACGAAGTTAAAAGAAAGATGCCTGATTCAAAAACAGGACGACCGATACATCATTCACTTATTAATCAGAAGTCATGCAAGACACGTAGGAAGAGCAAAGTTTCCCCAGATTCTAGCTCATGGCCAACAATCTTTTCTTGAGTACTTTTTGGCCCTGATATTGAGAAACGCGAAGACATTTTTGGGAAAAGATACTTGTAAAGACGCTTTTGACTTATTTAATGCAGAAAGGCTTAATTATGAGTCCACTCTTAGAGATGTCAGCGACAAGAAGATCAGGAACTGTAGAGAACTGGAAGATGTTGTAACCGAATGTCGGCTGGTGGTACCTTACTTAGGAGCCTGTGTCCACATAAAGCTGTATGATGACTTCTTAAAAGGACTTCTGTATTTTGCCCAAAAGCAAGAAAAAGTTCTCCAAAAAGTAGAAATTTTGTGCGTCCTTAATCACGAAGGAAGGAAACGTGGTTGTGCAAACAAACAGTTTCAAGAAGAAGCAATAAAATTACATGATGAAAATGTTCATTTATTTGAACAGAACGGTCCGTCTGAGGTAGTTTATTTGAGTTTTTATGGCAGATATCTCGTACATTGTAATGAAAAAGAAGAGGGTCAGCTTGTTTTGAAAAAAGCGCTTTCCATTTATGAAGAGCAAAAGGTTGAATCTACATTTATTAAGACGAGAGCTCTCAGACAAATGGGGTTTACTTCAGAAGAAATGGGAAGTACCGAAGAGGCTTGCGAAAACTATTTAGAGGCATTACAGCTTCTCAAGGTCCGTTATGGCATTCACGTGTGGACTGCGTATACACATAAAGAGGTGGGAGATTATTACTTGCGCGTCCAAGAATTTCCCATGGCAGAAGAGAACTACCAGAAGGCAATTGGCATTTTAGAAGATATAAAAATAGCGGATCACAAAGAGGCAGTATCGATCTTTCGAGGTCTGGGACTGTGCTTTGAAAAGAGTGGAAAGTTTGACGAATCCCGAAAAACGTATGAAAAGGCAATCGATATTGCTGATAATACTATCGAGGGAAACCACAGATGGAAGGTTGAGATTAAAACCTTCTTAGCATTGCTTCTTTACACAAATTACCAAGAAGAAGTCAATACAGCAAACAGAATTGCGAATGAAGCTCTTCAAATGGGCAAAAAACTTGGAATGAAGGATTGGCAAAGAAAAAAAGAACTTGAAGAAATGCAGAAAAAGCAACTTCGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF00931	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR042197	Homologous_superfamily	Apoptotic protease-activating factors, helical domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002182	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691	REGULATOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043531	Molecular Function	ADP binding	Interproscan