Detailed information of evm.model.Ap4.5916 in Astrangia poculata

Genomic Location: Ap4:43750526...43757726
NR annotation: XP_020621483.1, collagen alpha-1(XXV) chain-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050632FamilyNematode Cuticular CollagenInterproscan
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24637COLLAGENInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0030246Molecular Functioncarbohydrate bindingInterproscan

TOP