Gene detail

Detailed information of evm.model.Ap4.6816 in Astrangia poculata

Genomic Location: Ap4:52681566...52692489
NR annotation: XP_020607424.1, cytochrome P450 1A3-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap4.6816

atggtcaaggaaaacgaagaagaaaaaacgtcgtctgtttctgcaaagccgctgcgatatccttgccgattctgtggaagaaagcatgacggaaaacgtgaagcttgccctgcttggggaaagaagtgtaataagtgcggaaaggataaccactttgcaaaacaatgcagtttgaattctaactctaaacaagtctccatggtggaggaagaggatgagtatcctgttttcaaggtattcaaagtctcggcgagtcagagctccgactcgaacctcgtgacgctaaaaattgcaagcgggaacttaatacgctttgaaatcgacactggagcccgttgcaatgtttcaccggttcatatctacaagaaagcaactggcgactaccgccttaagaacgttagcccagtgaagtcgtcaattgtgtcttatgatggtggaagtattccggttctgggaacagtaaagatactagtacagcgtggatcttatacgtgttttctgttgtgtcgtctggtggagagcaaacgttgccgtccaattctaggcaaatccgcgtgcgaggggatgggcgtagtcgaaatcaaagactctgacgctattagacagcctggcaccagtggtggtgaagttttctctgttcaagacgcagtttctagctctaaaattcttaccaaagagcaagtcattgagatgtttcctgatgtttttgatgatgggcttgtgaagtccctggagcttgtggaccacctcgagaccctgcgtgtttctccatctcgactggcgcagattgagaatgagtcctcccaagatcagtttcgtgggggactgattgtccaaggacatttgattttccgtggttctcgtctatttgttcccagtgccctgaggaaagaaattatttcgttggctcattcaagtcacatcggtcttggtggttgccttcgtcgtcttcgagaatgcatgttctggcctgggatgagttcgcaaatgacagattttgttagtcagtgtgatgtatgcctcacccatcgcgactcacaagttcgggaacccatccttcagcacgatgtttctccgcgtccttgggccaaagtaggtgctgacctttgccatttctcaggtcgaatcctcctagttgtgagtgactacttcagcaacttcattgaggtcgattctgtctctgcagaaaactccaaagctgtaatcagaagtctaatggccatgttcagccgatatggggtgccagattccatagttactgacaatgggccgtgctttgcgtcgtcagaggtcgcaaaatttgccagtcagtggaatttccaacatgtcacttctagtccccgatatccccagagcaatggtaaggccgagaatgcagttcgcacggtcaaacgcctccttaggaaatgccgggctgctggtgtcagtgaatttcaagcacttcttgattggcgcaatactccaagcgagggattggatgctagtccggcccaacgtttctttggacgtcgttgtaagacgttactgccggtcactgaagctcttctcaagccaaggtttagccttgccgctgatgctaggaagctaagtgcccagaaggacaagcagaagaaattctacaatcgtggcaagctctctcttgctccacttaaacctggtgaagcggttcgtgttcgttccccgcgaggtacctggaaacgaggtatatgtttgagagaagtagctcccagatcttatgatgtgcaagttgacggggaagttcgccgtagaaatcggaaagatatttggcgtgtcaatgaggagaaaatgccgctgaacgactatgagcttccttcgccgcagtttgaagaggttgctcctgaatccactgtgctgttcccttcgcctgtgcctcagaaccctgtggctcagcccgttgccccggtccctgtggccacacctgcgtcgttgcccctcggagctgaacctacgccagcaccgggctcatctggcgagcaggagatcagaagccgatgctttgaaactctcaagttcgccacggccaacatcatacttggtgcactgttcggagtcaatcgttcgtatgatgatgaaggccttcgtgaaattcttcggcacacagacgacttcagtcaagtagtgaatggcaatagccatgttgatttcctgccacttctgaagtatctccccagtaaaggactttcaaagcttttattgataatgaagaccgtgacggacgccactaccaagatgtttgtggaaaacaaacaaacctacactggaggggaagttcgcaacatcgcagacagttttatcaacgtcgtcgagaaggaaaccgtgaaagaggcggaggatcgtcctgctggcgacgacactgtaaacatggcccctctgctcagtgatgaacagattattcgagccttgttggatctcttttgtgctggcttcgacacctcgtccatcaccatttactggggcctagcatacctggtgaaatatccagatatccaacagcagctgcatgaagagttagatctcgtgattggtcgagaaaggctgccgaccttgtcagacatggcatcccttcctcttctgcaagccacagtctatgagcttctgagggtgacaagccttgcgcctctctctgtgcctcgctccacaacaaccgagacgaaacttcgcgacttcacaatcccgaaagacacgatggtcttcgttaacttgtggtctgtgcatcgcgatcccgcaatctggaaagaccctgacgttttcaaccccaggcgttttctgaacggagctggagaggtaatcgacccgaagtctattggaggtttcttaccattttcgaagggtcgtcgaaagtgtcccggtgagcctttggccctgaagtcagtttctgtgttccttgctgcgctgcttcacagcttcaaattttcgcaggatggattgccagccgagtaccaaggcattgaccttcagggaaaatgtggccttactttgaatccaaagaagttttatgtgcggatcgaagaacggcaataa

Transcript

evm.model.Ap4.6816

ATGGTCAAGGAAAACGAAGAAGAAAAAACGTCGTCTGTTTCTGCAAAGCCGCTGCGATATCCTTGCCGATTCTGTGGAAGAAAGCATGACGGAAAACGTGAAGCTTGCCCTGCTTGGGGAAAGAAGTGTAATAAGTGCGGAAAGGATAACCACTTTGCAAAACAATGCAGTTTGAATTCTAACTCTAAACAAGTCTCCATGGTGGAGGAAGAGGATGAGTATCCTGTTTTCAAGGTATTCAAAGTCTCGGCGAGTCAGAGCTCCGACTCGAACCTCGTGACGCTAAAAATTGCAAGCGGGAACTTAATACGCTTTGAAATCGACACTGGAGCCCGTTGCAATGTTTCACCGGTTCATATCTACAAGAAAGCAACTGGCGACTACCGCCTTAAGAACGTTAGCCCAGTGAAGTCGTCAATTGTGTCTTATGATGGTGGAAGTATTCCGGTTCTGGGAACAGTAAAGATACTAGTACAGCGTGGATCTTATACGTGTTTTCTGTTGTGTCGTCTGGTGGAGAGCAAACGTTGCCGTCCAATTCTAGGCAAATCCGCGTGCGAGGGGATGGGCGTAGTCGAAATCAAAGACTCTGACGCTATTAGACAGCCTGGCACCAGTGGTGGTGAAGTTTTCTCTGTTCAAGACGCAGTTTCTAGCTCTAAAATTCTTACCAAAGAGCAAGTCATTGAGATGTTTCCTGATGTTTTTGATGATGGGCTTGTGAAGTCCCTGGAGCTTGTGGACCACCTCGAGACCCTGCGTGTTTCTCCATCTCGACTGGCGCAGATTGAGAATGAGTCCTCCCAAGATCAGTTTCGTGGGGGACTGATTGTCCAAGGACATTTGATTTTCCGTGGTTCTCGTCTATTTGTTCCCAGTGCCCTGAGGAAAGAAATTATTTCGTTGGCTCATTCAAGTCACATCGGTCTTGGTGGTTGCCTTCGTCGTCTTCGAGAATGCATGTTCTGGCCTGGGATGAGTTCGCAAATGACAGATTTTGTTAGTCAGTGTGATGTATGCCTCACCCATCGCGACTCACAAGTTCGGGAACCCATCCTTCAGCACGATGTTTCTCCGCGTCCTTGGGCCAAAGTAGGTGCTGACCTTTGCCATTTCTCAGGTCGAATCCTCCTAGTTGTGAGTGACTACTTCAGCAACTTCATTGAGGTCGATTCTGTCTCTGCAGAAAACTCCAAAGCTGTAATCAGAAGTCTAATGGCCATGTTCAGCCGATATGGGGTGCCAGATTCCATAGTTACTGACAATGGGCCGTGCTTTGCGTCGTCAGAGGTCGCAAAATTTGCCAGTCAGTGGAATTTCCAACATGTCACTTCTAGTCCCCGATATCCCCAGAGCAATGGTAAGGCCGAGAATGCAGTTCGCACGGTCAAACGCCTCCTTAGGAAATGCCGGGCTGCTGGTGTCAGTGAATTTCAAGCACTTCTTGATTGGCGCAATACTCCAAGCGAGGGATTGGATGCTAGTCCGGCCCAACGTTTCTTTGGACGTCGTTGTAAGACGTTACTGCCGGTCACTGAAGCTCTTCTCAAGCCAAGGTTTAGCCTTGCCGCTGATGCTAGGAAGCTAAGTGCCCAGAAGGACAAGCAGAAGAAATTCTACAATCGTGGCAAGCTCTCTCTTGCTCCACTTAAACCTGGTGAAGCGGTTCGTGTTCGTTCCCCGCGAGGTACCTGGAAACGAGGTATATGTTTGAGAGAAGTAGCTCCCAGATCTTATGATGTGCAAGTTGACGGGGAAGTTCGCCGTAGAAATCGGAAAGATATTTGGCGTGTCAATGAGGAGAAAATGCCGCTGAACGACTATGAGCTTCCTTCGCCGCAGTTTGAAGAGGTTGCTCCTGAATCCACTGTGCTGTTCCCTTCGCCTGTGCCTCAGAACCCTGTGGCTCAGCCCGTTGCCCCGGTCCCTGTGGCCACACCTGCGTCGTTGCCCCTCGGAGCTGAACCTACGCCAGCACCGGGCTCATCTGGCGAGCAGGAGATCAGAAGCCGATGCTTTGAAACTCTCAAGTTCGCCACGGCCAACATCATACTTGGTGCACTGTTCGGAGTCAATCGTTCGTATGATGATGAAGGCCTTCGTGAAATTCTTCGGCACACAGACGACTTCAGTCAAGTAGTGAATGGCAATAGCCATGTTGATTTCCTGCCACTTCTGAAGTATCTCCCCAGTAAAGGACTTTCAAAGCTTTTATTGATAATGAAGACCGTGACGGACGCCACTACCAAGATGTTTGTGGAAAACAAACAAACCTACACTGGAGGGGAAGTTCGCAACATCGCAGACAGTTTTATCAACGTCGTCGAGAAGGAAACCGTGAAAGAGGCGGAGGATCGTCCTGCTGGCGACGACACTGTAAACATGGCCCCTCTGCTCAGTGATGAACAGATTATTCGAGCCTTGTTGGATCTCTTTTGTGCTGGCTTCGACACCTCGTCCATCACCATTTACTGGGGCCTAGCATACCTGGTGAAATATCCAGATATCCAACAGCAGCTGCATGAAGAGTTAGATCTCGTGATTGGTCGAGAAAGGCTGCCGACCTTGTCAGACATGGCATCCCTTCCTCTTCTGCAAGCCACAGTCTATGAGCTTCTGAGGGTGACAAGCCTTGCGCCTCTCTCTGTGCCTCGCTCCACAACAACCGAGACGAAACTTCGCGACTTCACAATCCCGAAAGACACGATGGTCTTCGTTAACTTGTGGTCTGTGCATCGCGATCCCGCAATCTGGAAAGACCCTGACGTTTTCAACCCCAGGCGTTTTCTGAACGGAGCTGGAGAGGTAATCGACCCGAAGTCTATTGGAGGTTTCTTACCATTTTCGAAGGGTCGTCGAAAGTGTCCCGGTGAGCCTTTGGCCCTGAAGTCAGTTTCTGTGTTCCTTGCTGCGCTGCTTCACAGCTTCAAATTTTCGCAGGATGGATTGCCAGCCGAGTACCAAGGCATTGACCTTCAGGGAAAATGTGGCCTTACTTTGAATCCAAAGAAGTTTTATGTGCGGATCGAAGAACGGCAATAA

Protein

Uniprot

Uniprot term	Description
Q6JZS3	Cytochrome P450 1A1 OS=Oryzias latipes OX=8090 GN=cyp1a1 PE=3 SV=1
P79761	Cytochrome P450 1A5 OS=Gallus gallus OX=9031 GN=CYP1A5 PE=2 SV=1
P00184	Cytochrome P450 1A1 OS=Mus musculus OX=10090 GN=Cyp1a1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24289	STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004508	Molecular Function	steroid 17-alpha-monooxygenase activity	Interproscan
GO:0042446	Biological Process	hormone biosynthetic process	Interproscan
GO:0042448	Biological Process	progesterone metabolic process	Interproscan
GO:0047442	Molecular Function	obsolete 17-alpha-hydroxyprogesterone aldolase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan