Gene detail

Detailed information of evm.model.Ap4.7215 in Astrangia poculata

Genomic Location: Ap4:56970316...56978754
NR annotation: XP_020627177.1, uncharacterized protein LOC110064464 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap4.7215

atggccgagaaaatgacaaacggagaaggaagttctggaacggtagtttctcgggtggaagatgacattcacatcgacccgacgagtgtttctcgaagcatttatgtgacaggttttctagcgacaacaaaatcggaagagctaattattcattttcagcgtaagaaaaatggcggcggtgatatcgacggtatcattatcagtaagcgaggagctgcagtgataacattcgacagccctgaagttgtccaatcagttgtacagcaggaacaggagtttcaaggagttgctttaaaagtcaaaccgtatgaggaaaccatgacgaggaatgatcataactttgaggtgtttgagctggtgtctgcagagctttgcttggaaactgtggaactcctcacccgggagcaaacgaaaacccttttaaaggaaatcgctggcaaaactggtattgagtggattgataccagtgaaagttttacaatgtcaggagctttcaaacaagtggagatgtcccgtacctacttacaacaggctataaatcaaactggtggaatttcagaattcactcggatgcaaaggaaaaagttacaaccccagaaacgtcaagaaaatgagtctcatttcagtggcgaggaatacgaagaagatctgaaccagaccagccccggggtaaatgcaatgcagaatgaagaaaatctccatgaagaagaaccaaacgaaacacacgccaaccacgttgccactgtcaaaccttcagaaattcatcattttgaggtcgaaccgaagttcataaaagtgtttgtcaaagcacacgaaacagaaataagcgacattgaagccgaataccacgtgaaggtaccaagagaggccaaagaaggcaaaattagcttgacaccaaaggatgtgtccactagtgaggagtacgacaaggcttgcaacctgttcattgacttgtaccaacaaatgactcagattatgaagatggaacgcttctcgctcaaggatgaaaaaaatgttgtcgctgctcgaaagaaaattcacgaaatgagtaaaaaatttccaattctggttgaggtaggacaggataaaaagcactgggagctgtacggagagcatcacgacttggaagcagctctggagttccttaaaaaggagaaggtggaaataaagagggaatcaaaacatggcagggggactgaagaatttcaaggatcgagagattatgaagaggcgatggatgttgatccacccaattctgccaataacggccaaagtaaagaactactggaaactagcataggtaaggtaaaggtgtctgtttacaagggagatcttaccagtgaagaggttgatgtcattgtgaacgccgccaacgatcgccttcaacacttgggaggtgtagccaaggccatacttgacagtggaggaaaagtcattgagaaagagtctaacaagattataaagcaacgaggatcactgaaagacggtgaagctgtcgcaactaatgctggaaggctgccttgcaagaaggttgtgcacgctgtgggtcccgaatatcgaaaagtaggattgtcccagagcaggctcctccttcgccaaacctgtttaaacagttttaaaattgcacaggaattgaaaatgacctccatagcattgccagccattagctccggtatttatggcatgccaaaagatgcgtgtgctgaagtgatgtttgatgccgttgaggagtttgctagacaaggcgattcgaagaagaagacgatcactgacattagattcgtgaacatagatgatcccacagtgcaagcatttaaaaaagagtttgtctctaggtttggtgacaaccatgaccattctgtaagtaaaagcctggctggaggacgggctattaaagtgccaccaacaggcgccgaaggtgctaattcctctgcaatgtcgacttcaagacgaaatcgcggtaaaaacaagagcatctctgacaacagtcgtacaacaaccaccacgagtagccatcaccacagtaccaattctgctgctacagccgatcaccctttgagtggtttcagtaatccgtcgtcttcagacacatcatacagtagggcagtgaagaaaagtgctggtgataataatgcaagagaacccacatctcaggagtctggtggtgcaggcataacggcgctccatctccctccagggggtaaggaagcttctagtactacggaccgaaaagaggaagatccctgtcctatttgtcttgatactataaccagtccacaaacgttgaagtgtaagcatgctttctgctccggatgccttcaaagagccttaaaaacaagcaacaagtgtcccgtgtgtcaagaacctcaaggtgttcttcgaggaaaccagccccctggagaaatgaggtctcgttttgaacgtggtggtgttccaggttacgaagggtacggtacaattgttatcgactatcacttcccatctggaattcaaggacgggaacatcctaaccccggccagtggtttggaggcacgtcccgaactgcttatcttccagatactcgtgaagggagagaggtgttgcaactactacggagagcctttgatgctcgattggtgtttacgattggtacttcaaatacaacaggactttcaaaccaaataacatggaatgatattcatcacaaaactagctggagtggcggcccttatcgatttggatatcctgacccagattacctacggcgagttaaagaagagttggccgctaaaggaatccgctga

Transcript

evm.model.Ap4.7215

ATGGCCGAGAAAATGACAAACGGAGAAGGAAGTTCTGGAACGGTAGTTTCTCGGGTGGAAGATGACATTCACATCGACCCGACGAGTGTTTCTCGAAGCATTTATGTGACAGGTTTTCTAGCGACAACAAAATCGGAAGAGCTAATTATTCATTTTCAGCGTAAGAAAAATGGCGGCGGTGATATCGACGGTATCATTATCAGTAAGCGAGGAGCTGCAGTGATAACATTCGACAGCCCTGAAGTTGTCCAATCAGTTGTACAGCAGGAACAGGAGTTTCAAGGAGTTGCTTTAAAAGTCAAACCGTATGAGGAAACCATGACGAGGAATGATCATAACTTTGAGGTGTTTGAGCTGGTGTCTGCAGAGCTTTGCTTGGAAACTGTGGAACTCCTCACCCGGGAGCAAACGAAAACCCTTTTAAAGGAAATCGCTGGCAAAACTGGTATTGAGTGGATTGATACCAGTGAAAGTTTTACAATGTCAGGAGCTTTCAAACAAGTGGAGATGTCCCGTACCTACTTACAACAGGCTATAAATCAAACTGGTGGAATTTCAGAATTCACTCGGATGCAAAGGAAAAAGTTACAACCCCAGAAACGTCAAGAAAATGAGTCTCATTTCAGTGGCGAGGAATACGAAGAAGATCTGAACCAGACCAGCCCCGGGGTAAATGCAATGCAGAATGAAGAAAATCTCCATGAAGAAGAACCAAACGAAACACACGCCAACCACGTTGCCACTGTCAAACCTTCAGAAATTCATCATTTTGAGGTCGAACCGAAGTTCATAAAAGTGTTTGTCAAAGCACACGAAACAGAAATAAGCGACATTGAAGCCGAATACCACGTGAAGGTACCAAGAGAGGCCAAAGAAGGCAAAATTAGCTTGACACCAAAGGATGTGTCCACTAGTGAGGAGTACGACAAGGCTTGCAACCTGTTCATTGACTTGTACCAACAAATGACTCAGATTATGAAGATGGAACGCTTCTCGCTCAAGGATGAAAAAAATGTTGTCGCTGCTCGAAAGAAAATTCACGAAATGAGTAAAAAATTTCCAATTCTGGTTGAGGTAGGACAGGATAAAAAGCACTGGGAGCTGTACGGAGAGCATCACGACTTGGAAGCAGCTCTGGAGTTCCTTAAAAAGGAGAAGGTGGAAATAAAGAGGGAATCAAAACATGGCAGGGGGACTGAAGAATTTCAAGGATCGAGAGATTATGAAGAGGCGATGGATGTTGATCCACCCAATTCTGCCAATAACGGCCAAAGTAAAGAACTACTGGAAACTAGCATAGGTAAGGTAAAGGTGTCTGTTTACAAGGGAGATCTTACCAGTGAAGAGGTTGATGTCATTGTGAACGCCGCCAACGATCGCCTTCAACACTTGGGAGGTGTAGCCAAGGCCATACTTGACAGTGGAGGAAAAGTCATTGAGAAAGAGTCTAACAAGATTATAAAGCAACGAGGATCACTGAAAGACGGTGAAGCTGTCGCAACTAATGCTGGAAGGCTGCCTTGCAAGAAGGTTGTGCACGCTGTGGGTCCCGAATATCGAAAAGTAGGATTGTCCCAGAGCAGGCTCCTCCTTCGCCAAACCTGTTTAAACAGTTTTAAAATTGCACAGGAATTGAAAATGACCTCCATAGCATTGCCAGCCATTAGCTCCGGTATTTATGGCATGCCAAAAGATGCGTGTGCTGAAGTGATGTTTGATGCCGTTGAGGAGTTTGCTAGACAAGGCGATTCGAAGAAGAAGACGATCACTGACATTAGATTCGTGAACATAGATGATCCCACAGTGCAAGCATTTAAAAAAGAGTTTGTCTCTAGGTTTGGTGACAACCATGACCATTCTGTAAGTAAAAGCCTGGCTGGAGGACGGGCTATTAAAGTGCCACCAACAGGCGCCGAAGGTGCTAATTCCTCTGCAATGTCGACTTCAAGACGAAATCGCGGTAAAAACAAGAGCATCTCTGACAACAGTCGTACAACAACCACCACGAGTAGCCATCACCACAGTACCAATTCTGCTGCTACAGCCGATCACCCTTTGAGTGGTTTCAGTAATCCGTCGTCTTCAGACACATCATACAGTAGGGCAGTGAAGAAAAGTGCTGGTGATAATAATGCAAGAGAACCCACATCTCAGGAGTCTGGTGGTGCAGGCATAACGGCGCTCCATCTCCCTCCAGGGGGTAAGGAAGCTTCTAGTACTACGGACCGAAAAGAGGAAGATCCCTGTCCTATTTGTCTTGATACTATAACCAGTCCACAAACGTTGAAGTGTAAGCATGCTTTCTGCTCCGGATGCCTTCAAAGAGCCTTAAAAACAAGCAACAAGTGTCCCGTGTGTCAAGAACCTCAAGGTGTTCTTCGAGGAAACCAGCCCCCTGGAGAAATGAGGTCTCGTTTTGAACGTGGTGGTGTTCCAGGTTACGAAGGGTACGGTACAATTGTTATCGACTATCACTTCCCATCTGGAATTCAAGGACGGGAACATCCTAACCCCGGCCAGTGGTTTGGAGGCACGTCCCGAACTGCTTATCTTCCAGATACTCGTGAAGGGAGAGAGGTGTTGCAACTACTACGGAGAGCCTTTGATGCTCGATTGGTGTTTACGATTGGTACTTCAAATACAACAGGACTTTCAAACCAAATAACATGGAATGATATTCATCACAAAACTAGCTGGAGTGGCGGCCCTTATCGATTTGGATATCCTGACCCAGATTACCTACGGCGAGTTAAAGAAGAGTTGGCCGCTAAAGGAATCCGCTGA

Protein

Uniprot

Gene family

Uniprot term	Description
Q3UIR3	E3 ubiquitin-protein ligase DTX3L OS=Mus musculus OX=10090 GN=Dtx3l PE=1 SV=1
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
Q5REG4	Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii OX=9601 GN=DTX3 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan
PF01661	Macro	Macro domain	Domain	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039398	Family	Deltex family	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622	DELTEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan