Gene detail

Detailed information of evm.model.Ap4.859 in Astrangia poculata

Genomic Location: Ap4:8991079...9008255
NR annotation: XP_027038485.1, PAX-interacting protein 1-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap4.859

gcctgtgaaatgcttctaccgtgtggagcctttcggcctgaatcagaacagctcttcaaaggagttgtggtttgcccttcacagattccaataaatgatcgagatgcattgtgggccatggttacatattatggaggcgagtgtcaagtaaacttgaactccaactgcagtcatttggtgattccacatccatcaggcgctaaatacgaatgtgctttgaagcataaggacaccatcaagattgtcaccccaagctggattgttgacagtataaagaaaaagaagaggcttgatgaaggaaagtacatgccttccaaagcccagataaaaacagaaactgaaacaacaagctcccttttaacgcccgatgataatgacagaactacagcaacacctctccctgcttgtgttgctcaagacacgactgtttccactcctgtgatggcaggttcaaaggcagctgataccttgccgtcagctctcatgagccctgtgtctccagcggttaccactgctgccgagggcaacttggctgtgacaactgtgcaaagtacgccaagcatgactacgccagaagcggacaagaagagttccacaagagatagcaatgcttcaacagaaacagacaaaacagatacagagcaagagagtgtcacagacgtaccaagtggtggagtcaaattagttgaaaataacaatgaggcaattcttgaaaatgaaaatgaaaaagaaaacaaagcaataacaaatgaacaagatccaggaatatccactgagaatcaagggtcgagttgtttggccggctgtgtttttgttatatcggattatcaggatcgcatggatccttccattcttaatacgtggattgaagtagtacaacagcatggcggcaaagtcagccctatttactcaaaccaatgtactcacttactgtgtctaaaccaacatggagacttttatcaaaaggcaatttcagatgggaagcgcattgtaacagcacactggttaaatgatgtgttgatagcaaaggatatgtttccaccatctaaccctcttcaccttcctgtcccatttaaggataaagtaaaccagtgcaaaactatggttatcacagtaacagggtacacaggtacagagcgttcacttctgaagaacatgatattcatcattggtgcaagatacactggttatttaactcgcgcaaatacacacataatttgcaagagttcttcaggtgacaagtacaccaaggcaagggaatggggaatattctgtgtgaatgccaagtggcttggagatattgttacaactggctatccatcgccctgtaatcttgtgaggtactcaacacttggtgaaccaaacgaactggaaataactaaagatcttctggtcagagaacttatacttccctggcagaccttagcagatggttcaaaaactgagatgccaacgaacagcggaaagcggaaatttggagagcagagtacacctgaaaatggtcaactaagaaaagcaaggagaacttcaagtcctgccaatactgaaaaacctgaagggcctaaagtcctttttaccggtataattccatcagaagtgtcaagattaactgagataattgttaatcttgggggagtggtagtgacctctgtaaaagactgcactcaccttgttacaagaaagataattcggacagtgaaattcctttgtgcaatctctgttgcaaaatatgttgtgtcgcctgagtggatagacaagagtcaaccgtcaaatacttttcttgatcctagtgaatttacagtaaaagattcattttctgaagacatttacgacatggatttggtcacatcactgcaaagagcaagaactcgcccactcttgcaggatatcttggtgtatgtgacccaaaatgttgagccaagtccatcctccatgaaggaaattatccagtgtgcagggggtcaggtgttaccaagtgtcccgtcacaacagtacctgacagaattaaaacaaaaggctgtggaaaagggatcacctgtcttactgataattagttgtgaaaaggattaccaactatgttcagaatttatcagaaaaggatttgagatacacaatgctgaactcatcctgtccggtgttttgaagcagcacctggatctagatttatacaaactctga

Transcript

evm.model.Ap4.859

GCCTGTGAAATGCTTCTACCGTGTGGAGCCTTTCGGCCTGAATCAGAACAGCTCTTCAAAGGAGTTGTGGTTTGCCCTTCACAGATTCCAATAAATGATCGAGATGCATTGTGGGCCATGGTTACATATTATGGAGGCGAGTGTCAAGTAAACTTGAACTCCAACTGCAGTCATTTGGTGATTCCACATCCATCAGGCGCTAAATACGAATGTGCTTTGAAGCATAAGGACACCATCAAGATTGTCACCCCAAGCTGGATTGTTGACAGTATAAAGAAAAAGAAGAGGCTTGATGAAGGAAAGTACATGCCTTCCAAAGCCCAGATAAAAACAGAAACTGAAACAACAAGCTCCCTTTTAACGCCCGATGATAATGACAGAACTACAGCAACACCTCTCCCTGCTTGTGTTGCTCAAGACACGACTGTTTCCACTCCTGTGATGGCAGGTTCAAAGGCAGCTGATACCTTGCCGTCAGCTCTCATGAGCCCTGTGTCTCCAGCGGTTACCACTGCTGCCGAGGGCAACTTGGCTGTGACAACTGTGCAAAGTACGCCAAGCATGACTACGCCAGAAGCGGACAAGAAGAGTTCCACAAGAGATAGCAATGCTTCAACAGAAACAGACAAAACAGATACAGAGCAAGAGAGTGTCACAGACGTACCAAGTGGTGGAGTCAAATTAGTTGAAAATAACAATGAGGCAATTCTTGAAAATGAAAATGAAAAAGAAAACAAAGCAATAACAAATGAACAAGATCCAGGAATATCCACTGAGAATCAAGGGTCGAGTTGTTTGGCCGGCTGTGTTTTTGTTATATCGGATTATCAGGATCGCATGGATCCTTCCATTCTTAATACGTGGATTGAAGTAGTACAACAGCATGGCGGCAAAGTCAGCCCTATTTACTCAAACCAATGTACTCACTTACTGTGTCTAAACCAACATGGAGACTTTTATCAAAAGGCAATTTCAGATGGGAAGCGCATTGTAACAGCACACTGGTTAAATGATGTGTTGATAGCAAAGGATATGTTTCCACCATCTAACCCTCTTCACCTTCCTGTCCCATTTAAGGATAAAGTAAACCAGTGCAAAACTATGGTTATCACAGTAACAGGGTACACAGGTACAGAGCGTTCACTTCTGAAGAACATGATATTCATCATTGGTGCAAGATACACTGGTTATTTAACTCGCGCAAATACACACATAATTTGCAAGAGTTCTTCAGGTGACAAGTACACCAAGGCAAGGGAATGGGGAATATTCTGTGTGAATGCCAAGTGGCTTGGAGATATTGTTACAACTGGCTATCCATCGCCCTGTAATCTTGTGAGGTACTCAACACTTGGTGAACCAAACGAACTGGAAATAACTAAAGATCTTCTGGTCAGAGAACTTATACTTCCCTGGCAGACCTTAGCAGATGGTTCAAAAACTGAGATGCCAACGAACAGCGGAAAGCGGAAATTTGGAGAGCAGAGTACACCTGAAAATGGTCAACTAAGAAAAGCAAGGAGAACTTCAAGTCCTGCCAATACTGAAAAACCTGAAGGGCCTAAAGTCCTTTTTACCGGTATAATTCCATCAGAAGTGTCAAGATTAACTGAGATAATTGTTAATCTTGGGGGAGTGGTAGTGACCTCTGTAAAAGACTGCACTCACCTTGTTACAAGAAAGATAATTCGGACAGTGAAATTCCTTTGTGCAATCTCTGTTGCAAAATATGTTGTGTCGCCTGAGTGGATAGACAAGAGTCAACCGTCAAATACTTTTCTTGATCCTAGTGAATTTACAGTAAAAGATTCATTTTCTGAAGACATTTACGACATGGATTTGGTCACATCACTGCAAAGAGCAAGAACTCGCCCACTCTTGCAGGATATCTTGGTGTATGTGACCCAAAATGTTGAGCCAAGTCCATCCTCCATGAAGGAAATTATCCAGTGTGCAGGGGGTCAGGTGTTACCAAGTGTCCCGTCACAACAGTACCTGACAGAATTAAAACAAAAGGCTGTGGAAAAGGGATCACCTGTCTTACTGATAATTAGTTGTGAAAAGGATTACCAACTATGTTCAGAATTTATCAGAAAAGGATTTGAGATACACAATGCTGAACTCATCCTGTCCGGTGTTTTGAAGCAGCACCTGGATCTAGATTTATACAAACTCTGA

Protein

Uniprot

Uniprot term	Description
A0JNA8	PAX-interacting protein 1 OS=Bos taurus OX=9913 GN=PAXIP1 PE=2 SV=1
Q6NZQ4	PAX-interacting protein 1 OS=Mus musculus OX=10090 GN=Paxip1 PE=1 SV=1
Q6ZW49	PAX-interacting protein 1 OS=Homo sapiens OX=9606 GN=PAXIP1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16589	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF16770	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan
PF12738	PTCB-BRCT	twin BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR051579	Family	DNA Damage Response and Transcriptional Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23196	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14972	PAXIP1, PTIP; PAX-interacting protein 1	-	Chromosome and associated proteins	ko03036	deepkoala