Detailed information of evm.model.Ap5.1006 in Astrangia poculata

Genomic Location: Ap5:10536700...10537849
NR annotation: XP_020607957.1, high mobility group protein B2-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q4WY33Non-histone chromosomal protein 6 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=nhp6 PE=3 SV=1
Q6P8W9High mobility group protein B4 OS=Mus musculus OX=10090 GN=Hmgb4 PE=1 SV=1
P40632High mobility group protein homolog NHP1 OS=Babesia bovis OX=5865 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09011HMG_box_2HMG-box domainDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050342FamilyHigh Mobility Group Box (HMGB)Interproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48112HIGH MOBILITY GROUP PROTEIN DSP1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008301Molecular FunctionDNA binding, bendingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10802HMGB1; high mobility group protein B1-Exosomeko04147deepkoala

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