Gene detail

Detailed information of evm.model.Ap5.2034 in Astrangia poculata

Genomic Location: Ap5:21512704...21517949
NR annotation: XP_028412571.1, uncharacterized protein LOC114535463 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap5.2034

atgcgaaagcagtcgatggcggacggccacgtggtgtgcgggctgcgacttttgctactaattttttgttactatgctgctatttgcaactcttatccggctgaatgttgcggtcaactttccatggatgacatgcttagttttttacaatgcggctggagtcggtatgatgatatttcttttaaattgccgactcaaccatattcaagaagtcgaacgagggcatatttgggactaagggttccttattacaacaatactacggctacgacacagtacgcgctccttaaactctccggaaatgttgaaagtaatcctggaccagccaatggaagcaattcagttggcacgaaggaaatctgcacaagttgtggtaaggcgcttcgaaagaatcaagatggcgtccgctgtatgggacactgtgctagaatttttcatgcaaagtgttctggtatgtctgcgaaagatctacgcagatatcgatcctctacgcaggactggttctgtcttaagtgttcactgcctcaacttagcgacagcttttttgaagactccatcgatatggcaagttgctcggattccttcacatcaagtgatgagtctgttctttcgccgatcgattggttcatctcgaacatcaatgcatactacaagagaaatttaaagatcggtcacctaaatgtgaatagcatttacggcaaagcggacgaagttacagatttactcaatacgtgccgatttgatattttcttcgtagcagaaagcaaaatcgacggaactgttagcagctctctatttgctcatcccgaatatcgcattatccgcagagataggaagaaaggtgctggtggcatgttggtttacattcgacgatctattaccgcccttcgccgtgtaaatctagaaccagagggtgttgaatcgatatgtttagacgttaagggctgtggaaactcttggttcttgatatgtgcgtgttaccgctcacccggcaaatgcaagatttcggaatttttaacatcgtgtgtttcagctgctgaaaaaatgtactcaaaacgtaaggaagtcgtgtttcttggtgactttaatattgatatgctgacggataatgggcttcctgccggatcaggttataatctttcaaatttctgcgaccaattctgtttgacaaacatgatatcatctcctacaagagtgacagcttcaacaaaaacgttgttggatgttattctcgtatcacaccctgagcgatttgccactggcggcactctccgtgttggcattagcgaccatgacttaatttacattgtcagaaaacaaagactacctaaaccgaacgtgagaagtattgaataccgatcaatgaagaactttgatgagccagcgtttgtttcagccttacgagacaccccatgggacactgcttatgtgtttgatgatgtgaatgatatttggtgccactgggaatcgcttctcaagcaagctattgatgatcacgccccaatcaagaaagcgaaccttaaaagcaatcacctaccatggatcaaccaaactattcaaaaacaaatgcgcttcaggaattatttgtatggaaaattccgccggtttccaacaaacgaaaactggaataattatcgattacagcgaaacaaagtcacagctctgaagagaaaatgtcttaaagatttttgctccgaagctgcatctgtttcttctagaggctcggttggtctattctggaagaaactgagaccacttttaccaaacaataagccaagtgacaggtcgagttctatttgtttgattgaaaatggcgcaattgcttctgactcttgtgcggttcttaatgaatacttcgcgtctcctgcaattgaggagtctgttttgaccttatccgcggatgacttttccaggcacatcagtattgttagtataaataagagggcaccgaaacttaatttttattttaagccagtcagcgacgcccaagtttctgatattctctctaatttgaacacaaggaaatcagctggtcctgatggccgccttcaacgtgttaaatgcaatgggaacgtgtcagactggctgcccattcgctgtggagtgccgcaagggagcctactaggcccgcttctcttcaatatctttgttaatgatgtcaattattcaactggatcttcctcactacgtctgtatgccgacgacacgacgcaatatgtagttcaagagtgtccaactatacttgaatccaccttgaatcaagacattatgagattatcgcactggttctctgcgaactatctgcaaattaatgcttccaagactcaagcaatgacattggaagtaagccacaaggatgtctgtttgacaatcaataaaaatggatatctgaaaccaatcaaagcttaa

Transcript

evm.model.Ap5.2034

ATGCGAAAGCAGTCGATGGCGGACGGCCACGTGGTGTGCGGGCTGCGACTTTTGCTACTAATTTTTTGTTACTATGCTGCTATTTGCAACTCTTATCCGGCTGAATGTTGCGGTCAACTTTCCATGGATGACATGCTTAGTTTTTTACAATGCGGCTGGAGTCGGTATGATGATATTTCTTTTAAATTGCCGACTCAACCATATTCAAGAAGTCGAACGAGGGCATATTTGGGACTAAGGGTTCCTTATTACAACAATACTACGGCTACGACACAGTACGCGCTCCTTAAACTCTCCGGAAATGTTGAAAGTAATCCTGGACCAGCCAATGGAAGCAATTCAGTTGGCACGAAGGAAATCTGCACAAGTTGTGGTAAGGCGCTTCGAAAGAATCAAGATGGCGTCCGCTGTATGGGACACTGTGCTAGAATTTTTCATGCAAAGTGTTCTGGTATGTCTGCGAAAGATCTACGCAGATATCGATCCTCTACGCAGGACTGGTTCTGTCTTAAGTGTTCACTGCCTCAACTTAGCGACAGCTTTTTTGAAGACTCCATCGATATGGCAAGTTGCTCGGATTCCTTCACATCAAGTGATGAGTCTGTTCTTTCGCCGATCGATTGGTTCATCTCGAACATCAATGCATACTACAAGAGAAATTTAAAGATCGGTCACCTAAATGTGAATAGCATTTACGGCAAAGCGGACGAAGTTACAGATTTACTCAATACGTGCCGATTTGATATTTTCTTCGTAGCAGAAAGCAAAATCGACGGAACTGTTAGCAGCTCTCTATTTGCTCATCCCGAATATCGCATTATCCGCAGAGATAGGAAGAAAGGTGCTGGTGGCATGTTGGTTTACATTCGACGATCTATTACCGCCCTTCGCCGTGTAAATCTAGAACCAGAGGGTGTTGAATCGATATGTTTAGACGTTAAGGGCTGTGGAAACTCTTGGTTCTTGATATGTGCGTGTTACCGCTCACCCGGCAAATGCAAGATTTCGGAATTTTTAACATCGTGTGTTTCAGCTGCTGAAAAAATGTACTCAAAACGTAAGGAAGTCGTGTTTCTTGGTGACTTTAATATTGATATGCTGACGGATAATGGGCTTCCTGCCGGATCAGGTTATAATCTTTCAAATTTCTGCGACCAATTCTGTTTGACAAACATGATATCATCTCCTACAAGAGTGACAGCTTCAACAAAAACGTTGTTGGATGTTATTCTCGTATCACACCCTGAGCGATTTGCCACTGGCGGCACTCTCCGTGTTGGCATTAGCGACCATGACTTAATTTACATTGTCAGAAAACAAAGACTACCTAAACCGAACGTGAGAAGTATTGAATACCGATCAATGAAGAACTTTGATGAGCCAGCGTTTGTTTCAGCCTTACGAGACACCCCATGGGACACTGCTTATGTGTTTGATGATGTGAATGATATTTGGTGCCACTGGGAATCGCTTCTCAAGCAAGCTATTGATGATCACGCCCCAATCAAGAAAGCGAACCTTAAAAGCAATCACCTACCATGGATCAACCAAACTATTCAAAAACAAATGCGCTTCAGGAATTATTTGTATGGAAAATTCCGCCGGTTTCCAACAAACGAAAACTGGAATAATTATCGATTACAGCGAAACAAAGTCACAGCTCTGAAGAGAAAATGTCTTAAAGATTTTTGCTCCGAAGCTGCATCTGTTTCTTCTAGAGGCTCGGTTGGTCTATTCTGGAAGAAACTGAGACCACTTTTACCAAACAATAAGCCAAGTGACAGGTCGAGTTCTATTTGTTTGATTGAAAATGGCGCAATTGCTTCTGACTCTTGTGCGGTTCTTAATGAATACTTCGCGTCTCCTGCAATTGAGGAGTCTGTTTTGACCTTATCCGCGGATGACTTTTCCAGGCACATCAGTATTGTTAGTATAAATAAGAGGGCACCGAAACTTAATTTTTATTTTAAGCCAGTCAGCGACGCCCAAGTTTCTGATATTCTCTCTAATTTGAACACAAGGAAATCAGCTGGTCCTGATGGCCGCCTTCAACGTGTTAAATGCAATGGGAACGTGTCAGACTGGCTGCCCATTCGCTGTGGAGTGCCGCAAGGGAGCCTACTAGGCCCGCTTCTCTTCAATATCTTTGTTAATGATGTCAATTATTCAACTGGATCTTCCTCACTACGTCTGTATGCCGACGACACGACGCAATATGTAGTTCAAGAGTGTCCAACTATACTTGAATCCACCTTGAATCAAGACATTATGAGATTATCGCACTGGTTCTCTGCGAACTATCTGCAAATTAATGCTTCCAAGACTCAAGCAATGACATTGGAAGTAAGCCACAAGGATGTCTGTTTGACAATCAATAAAAATGGATATCTGAAACCAATCAAAGCTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan