Gene detail

Detailed information of evm.model.Ap5.328 in Astrangia poculata

Genomic Location: Ap5:3503474...3505587
NR annotation: XP_020602060.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

evm.model.Ap5.328

ACAGAGAGCCAAAACAACTGCCATGTTTACATATTTTCTGCCTTGAATGTCTGAACAACATAGCGAGAACTAGCGCCCGCCCTGGCAAGATCAAATGTCCGCTCTGCCAGATTGAAATCGTTGTTCCCGAAAGTGGCACCATGGAATCTCTGCCTAGCTGTTCTTACCCAAAAAATATTTTAGATGCTATGGCGATCAAAGAATGCAGCACCTCGAAAGTGACCTGTGGAAATTGTGAGATGAAGAGCGAAGAAACGTCGTATTGTTTTCATTGCGCAGGATTTTGGTGTAATGTTTGCCTCGAGGCGCACAACATTCTTCGCGCAAACAGAGATCACAACATCCTTATGCTTAAAGATTTTCAAGAAAAGGATGTTGAAGTCGTTCTCAAGCGACCGGCGTTTTGTCAGAAGGTGGGTCACGAGAGAGAAGCGCTCAAGTTTTATTGCAAAATGTGTGCAATCCCTGTGTGTCAGAACTGTGTGGATGTTGAACATGGCAAACACGACGTGGAATATTTAGAAGTAACTGCAACAGCGGTGAAGAACAGTATGGCAGCTCAACTGGAAGCTTCAGAAAAGGAAAGACAAACATTGTCCAATTGCTTGCGAGAATTGGAGGCGAAATCGCGTGGAATCAAACAGCATTCTCAATGCGTGATAACACAAATTCAGGATTCAGTAAAATCACTGATCCGCGAAATTCAACGATCGGAGCAGAAATTAATTATAAAAGTGGAAGAAGAGGCAAAGATCAAACAAGATCGCGTGACAAAGAACGAAACAATAGTCCGCGATCATCTCAAGCAGGTTGACGACACTATGTCACAAGCCAGGCATTTCATTGACTTTAGCACAACTGCAGATCTTGTGAGGGCAAAAGCGTTCATGAGCGAGCTACTGCAAAAACATCTGGCACCAGAATTGATCACATCTACTCAAGACAAAGAAACTTTCGATCTCCAGGCTGTCTTCGTGAAAAACAAAGCTTTATGTGACAGTATGCAAAATACAGGAATCGGTATCATAGGCAAAACTGCCACAAAAGCGAATCAATGTACCGTGGAAGACTTAAAAGAAGCGACTGCGGGCTTGGAAACCCGATTTAAACTTTTAACTCGGAATGCCAAAGGGAAACGGTCATATTCGCCTGGTGATCATGTTGTCGTGGAGTTAGCCTCGACAGAAGATGGAACACTCGCTGGAGAGATTAAAATTGTGAACAAGAATTATGGCAGCTACGAGGTTTCTTGTATTCCAAAACGGGAAGGAAAACATGAAGTCACTGCGCGCCTAAATGGAGAGGATGTCAGCCATCTCGAGCTTCCTGCCATTCACGTCAAGAATCGATCCTACAAACTTGTGCAAACTGTCAGTAGGAAGGGGACTGGTGCTGGAGAATCGTCTCTTCTATGGGGGATCGCAATCAATGACAAGAATGAAATTATAGTTAGCGACAAGAAAAATAACCGACTTCAAGTATTTAACGAAAGAGGAAACTTTATCAAAACTGTTGAACATGAGCTGTTGAGTTGTCCAAGTGGAATATGCATTGGTAATGCGGGAAGGATTTATGTAGCAGCCATGAATAAGATATTGTTGTTTAATCCAAACGGGGACTTTATTAAAGAGATTTGTTACGAAGAAAATCAAGATTGGGGTGGAATGGCATCGGATGAACAGGGAAATATCATTGTGAGCTGTAAAGGTGGAGTCCGCATTCTTTCACCAGAAGGTGAACTCCAAAAGGAACTAAGTAGAGACGGTCTCGTTCCATTCGACTGCTTGTACTATGAAAGAAAAATGTTTGTGTCTAACTGGGCCTCGGACAAAATTGAAGTTTTTAATTGTGAAGGGAAGTTCCTCAGAGAAATTGGCAAACAGGGCACTAGAAATGAAAAACTCTGTCTACCTACAGGACTAGCAATCGACAAAGCAGGACACCTTGTAGTTGCTGATGAGAGCGGGCTCCAAGTATTTACTTTGGATGGAACGTTTGTTACTAAGTTTGGAGGTGACGTACTCTCAGACCCTTATGGTGTGTCAATACTTGAAGACGGTCGTATTATTGTCGCTGATGGTGACAAAGGTCGATTATTATACACACTCGCCTAA

Protein

Uniprot

Uniprot term	Description
Q9U489	Protein lin-41 OS=Caenorhabditis elegans OX=6239 GN=lin-41 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala