Gene detail

Detailed information of evm.model.Ap5.90 in Astrangia poculata

Genomic Location: Ap5:1074931...1094026
NR annotation: XP_020618998.1, short transient receptor potential channel 5-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap5.90

atgtcaaaaagctctcaagaagtgtggactgaatcagtgaattttggaaagattcttctgatgaaaacgaagatgactcaaaacgacatggagatacatagggaaggaaatgaggaatacctaatgaaaaaattattatccaagaagaactcgtttgacgctattgagaagaaaattacaccaaaagcccttacaaagtgtgtctccaattctttgttaatgggcatgaaggtaaactatcgccttcgtaacttggcaaaaagtaaaggatccgagggagagatgtttaataagcttgccaactctgtggaggatttcactactcgtctgcttgatccaatgcagtctgaccaattacagagagagggctttggttattttattctagacgatattttggacgatgccattgagttgaaacagaaaaagttttttacccatccagttgttcattctgagatgaatcgtaaatggcgtggacggtttttaatgaagaaagacttaggaaagtggatgtggttctttcttcacgtctggtgcctttttgacatggttcttgctccaatcacgttttactttgtgtcatatttggaggtgtattctcttttctcagcatactacctgaaatacttgaaaacgccttatttcatatttgtacgtgacgcgctgagctacctcgccctccttcttcttcactatgctttctgcctggcgccgtcaagcttagcgttcagcggtttagagtggagcatactcatattcttcatgggtcgctttctagtggagtttggacagatacgtcttactgttaaacggataaaagaaaggaggaagagtggaaacgacgaaagtaattcaaatgttcttcaaaaagcacttagcagctatatcagtgaccgctggaacaagttggacgtcatcagtgtacttacttacttggtaatattcatactgagacttacaacgtggatcatatcagaatcagtgaaaaacaaccgagctgttcttgtcgctagctacctttacagcttcaataccttatgcctcactgtcagaatttttggtcacgtgttgaagacattcaaaagcgttggcacaattcagattgctttgttcaacattctgcaggatgtgttttctatcatgtggcagtttactgccgctgttttggctttttccgttgctattactaaaatatttatggcagagcaatcctttcattcaagtgaaagcaatcaacataagctttggtgggagattcttactcaccttagctggtctttgctggagatagaacaagacttcaatccattaaactctgtcgatactccttcagttactctcgctaagatgttctacgctgtttttctcttcattggtgtcattcttctagttaacatgttgatagccttgctatccaacacttatcagcgagtgaaagacaactcgttgaaggaatggtcatacaaaaaagctgttactatccagacctatgaatcttacaatccaatacatgcgcctcttaatattatatcagagttttttctgcttcattggtggaataaaaagaaggaaagaaaagaaagaaaaagaagcacccgaccccatgccgtgagagtgaagctgtcaaagactctttttcaacatcttgaagcaaaatattttgcaaagcacggaaatttgtttccagtgacagatgaaaagaaacttgacgaagtgtatatggaaacagaaaaaaaccgacaaatgctcagtcagattcttctaagaaccgtcaacacacagagctacgaacaacgtaatcgaggaactgacccaaaggcatgggacgtggttcgtggtttaaacatcaacggcaatgttttgacttgtgaaggagttgaagactacaaaacggaggcggatccagataaatgggttttgattttggaagcaggaataatgaggcgattgggaattgggatagtgatggaatcatatagcaaatctttgatgcctggctggcgagatggatctgtgggatatcatattgatcatggaaaagtcttcgatggaagtcccacagggaaagaaacgaaaggctacgctatggcttttcgtggagatttgattcgctgcacagtcatgttcaaagatgcggaaaagatcagcaatgctaaagttcgagttccagtggtcttcacacttaacaacaagagaataactcccgaaggaaaagataatgaactttttactcattatgatcccaatggtcagggactctttccttacattggtatgatggataaaggatgctcggtgttggctaagatgtgtgctaagaaagaggaagaatatcatccagatttgaaaactagcattgccaatatttaccaagaacatcaagatctgaaagctagcttcgcagacgtttgccaagaagttaaacaaatgaaggaatgcgtggaagagaacaacaagacactaaaggctttgctggccaagctcaatggcactgaagatacccaactgtaa

Transcript

evm.model.Ap5.90

ATGTCAAAAAGCTCTCAAGAAGTGTGGACTGAATCAGTGAATTTTGGAAAGATTCTTCTGATGAAAACGAAGATGACTCAAAACGACATGGAGATACATAGGGAAGGAAATGAGGAATACCTAATGAAAAAATTATTATCCAAGAAGAACTCGTTTGACGCTATTGAGAAGAAAATTACACCAAAAGCCCTTACAAAGTGTGTCTCCAATTCTTTGTTAATGGGCATGAAGGTAAACTATCGCCTTCGTAACTTGGCAAAAAGTAAAGGATCCGAGGGAGAGATGTTTAATAAGCTTGCCAACTCTGTGGAGGATTTCACTACTCGTCTGCTTGATCCAATGCAGTCTGACCAATTACAGAGAGAGGGCTTTGGTTATTTTATTCTAGACGATATTTTGGACGATGCCATTGAGTTGAAACAGAAAAAGTTTTTTACCCATCCAGTTGTTCATTCTGAGATGAATCGTAAATGGCGTGGACGGTTTTTAATGAAGAAAGACTTAGGAAAGTGGATGTGGTTCTTTCTTCACGTCTGGTGCCTTTTTGACATGGTTCTTGCTCCAATCACGTTTTACTTTGTGTCATATTTGGAGGTGTATTCTCTTTTCTCAGCATACTACCTGAAATACTTGAAAACGCCTTATTTCATATTTGTACGTGACGCGCTGAGCTACCTCGCCCTCCTTCTTCTTCACTATGCTTTCTGCCTGGCGCCGTCAAGCTTAGCGTTCAGCGGTTTAGAGTGGAGCATACTCATATTCTTCATGGGTCGCTTTCTAGTGGAGTTTGGACAGATACGTCTTACTGTTAAACGGATAAAAGAAAGGAGGAAGAGTGGAAACGACGAAAGTAATTCAAATGTTCTTCAAAAAGCACTTAGCAGCTATATCAGTGACCGCTGGAACAAGTTGGACGTCATCAGTGTACTTACTTACTTGGTAATATTCATACTGAGACTTACAACGTGGATCATATCAGAATCAGTGAAAAACAACCGAGCTGTTCTTGTCGCTAGCTACCTTTACAGCTTCAATACCTTATGCCTCACTGTCAGAATTTTTGGTCACGTGTTGAAGACATTCAAAAGCGTTGGCACAATTCAGATTGCTTTGTTCAACATTCTGCAGGATGTGTTTTCTATCATGTGGCAGTTTACTGCCGCTGTTTTGGCTTTTTCCGTTGCTATTACTAAAATATTTATGGCAGAGCAATCCTTTCATTCAAGTGAAAGCAATCAACATAAGCTTTGGTGGGAGATTCTTACTCACCTTAGCTGGTCTTTGCTGGAGATAGAACAAGACTTCAATCCATTAAACTCTGTCGATACTCCTTCAGTTACTCTCGCTAAGATGTTCTACGCTGTTTTTCTCTTCATTGGTGTCATTCTTCTAGTTAACATGTTGATAGCCTTGCTATCCAACACTTATCAGCGAGTGAAAGACAACTCGTTGAAGGAATGGTCATACAAAAAAGCTGTTACTATCCAGACCTATGAATCTTACAATCCAATACATGCGCCTCTTAATATTATATCAGAGTTTTTTCTGCTTCATTGGTGGAATAAAAAGAAGGAAAGAAAAGAAAGAAAAAGAAGCACCCGACCCCATGCCGTGAGAGTGAAGCTGTCAAAGACTCTTTTTCAACATCTTGAAGCAAAATATTTTGCAAAGCACGGAAATTTGTTTCCAGTGACAGATGAAAAGAAACTTGACGAAGTGTATATGGAAACAGAAAAAAACCGACAAATGCTCAGTCAGATTCTTCTAAGAACCGTCAACACACAGAGCTACGAACAACGTAATCGAGGAACTGACCCAAAGGCATGGGACGTGGTTCGTGGTTTAAACATCAACGGCAATGTTTTGACTTGTGAAGGAGTTGAAGACTACAAAACGGAGGCGGATCCAGATAAATGGGTTTTGATTTTGGAAGCAGGAATAATGAGGCGATTGGGAATTGGGATAGTGATGGAATCATATAGCAAATCTTTGATGCCTGGCTGGCGAGATGGATCTGTGGGATATCATATTGATCATGGAAAAGTCTTCGATGGAAGTCCCACAGGGAAAGAAACGAAAGGCTACGCTATGGCTTTTCGTGGAGATTTGATTCGCTGCACAGTCATGTTCAAAGATGCGGAAAAGATCAGCAATGCTAAAGTTCGAGTTCCAGTGGTCTTCACACTTAACAACAAGAGAATAACTCCCGAAGGAAAAGATAATGAACTTTTTACTCATTATGATCCCAATGGTCAGGGACTCTTTCCTTACATTGGTATGATGGATAAAGGATGCTCGGTGTTGGCTAAGATGTGTGCTAAGAAAGAGGAAGAATATCATCCAGATTTGAAAACTAGCATTGCCAATATTTACCAAGAACATCAAGATCTGAAAGCTAGCTTCGCAGACGTTTGCCAAGAAGTTAAACAAATGAAGGAATGCGTGGAAGAGAACAACAAGACACTAAAGGCTTTGCTGGCCAAGCTCAATGGCACTGAAGATACCCAACTGTAA

Protein

Uniprot

Uniprot term	Description
Q9R283	Short transient receptor potential channel 2 OS=Rattus norvegicus OX=10116 GN=Trpc2 PE=2 SV=2
Q9R244	Short transient receptor potential channel 2 OS=Mus musculus OX=10090 GN=Trpc2 PE=2 SV=2
P79100	Short transient receptor potential channel 4 OS=Bos taurus OX=9913 GN=TRPC4 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR002153	Family	Transient receptor potential channel, canonical	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR044736	Domain	Ran-binding protein Vid30/RanBPM/SPLA, SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10117	TRANSIENT RECEPTOR POTENTIAL CHANNEL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005262	Molecular Function	calcium channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0015279	Molecular Function	store-operated calcium channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034703	Cellular Component	cation channel complex	Interproscan
GO:0051480	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0070588	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0070679	Molecular Function	inositol 1,4,5 trisphosphate binding	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04950	CNGA3; cyclic nucleotide gated channel alpha 3	-	Ion channels	ko04040	deepkoala