Detailed information of evm.model.Ap6.1412 in Astrangia poculata

Genomic Location: Ap6:13752299...13758976
NR annotation: KAJ7379694.1, Basement membrane-specific heparan sulfate proteoglycan core protein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q95209Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00052Laminin_BLaminin B (Domain IV)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR000034DomainLaminin IVInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR006558DomainLamG-like jellyroll foldInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR050685FamilyLow-density lipoprotein receptorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24270LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

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