Detailed information of evm.model.Ap6.1528.2.5f15df76 in Astrangia poculata

Genomic Location: Ap6:14852311...14916393
NR annotation: KAJ7394677.1, 5'-3' exoribonuclease 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8IZH25'-3' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=XRN1 PE=1 SV=1
P977895'-3' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Xrn1 PE=1 SV=1
P403835'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exo2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18332XRN1_D1Exoribonuclease Xrn1 D1 domainDomainInterproscan
PF18129SH3_12Xrn1 SH3-like domainDomainInterproscan
PF18334XRN1_D2_D3Exoribonuclease Xrn1 D2/D3 domainDomainInterproscan
PF17846XRN_MXrn1 helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002048DomainEF-hand domainInterproscan
IPR040992Domain5'-3' exoribonuclease 1, D1 domainInterproscan
IPR041385Domain5'-3' exoribonuclease 1, SH3-like domainInterproscan
IPR041106DomainExoribonuclease Xrn1, D2/D3 domainInterproscan
IPR027073Family5'-3' exoribonucleaseInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR047008Homologous_superfamily5'-3' exoribonuclease 1, SH3-like domain superfamilyInterproscan
IPR047007Homologous_superfamily5'-3' exoribonuclease 1, D1 domain superfamilyInterproscan
IPR041412DomainXrn1, helical domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR123415'->3' EXORIBONUCLEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan

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