Gene detail

Detailed information of evm.model.Ap6.19 in Astrangia poculata

Genomic Location: Ap6:138615...151854
NR annotation: XP_022800996.1, echinoderm microtubule-associated protein-like 1 isoform X2 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap6.19

atgtcttatcgcggacgcggttacagtaattttcaacaacagcgtcgggcattgccgaatggcgctagtcatcgcggacggccttttcctgccgacagtaacagcgatttggaggacaacgatcacgttagacttcctgaaattgatagagatgtaagagaaagaagacctcagaagagagatggtaaacttaatagtcgcattcctttaccagcaaggaataacgaagccattggaaaccctcctgttggcgaccctcggcggccacgaaatcctccagaatttcctaataattctagctctgatccagcaggaaaagatcagcgaaaaagcagagtaaatgctgtgaaaagagttacgttttaccgtaatggggataaacatttcaaaggtgtcgagatggttgtgactaggcaacgatatcgatctttcgacaccattgttgaagacctatcaaaagcgattccacttccgtacggagtgagaaatgttttttcgcctggtggaagttcaattacaactattaaccagttagaggatggaagacattatatctgttcttcaggagaccagcttataaaaaatgtgaactacggtcaaaagcagaaagacaaggctcgctcgcttgatgtcgaaactttgtctgatggctcttcgttgtcttcgtcaagtagagattcgaagtttggcgggagcaattctgacggaaatccgaaaccgcgggttataacaatcctcagtgagtacgataaaaacaagaaatgtaaaatcttgttaaacagaaagacggtaaaaagcttcgaagacgttttaaaggacatttctgacatgttgaagtactcagttaaagaactgcgcactttggaaggaaccaaggtgaaaggtctctcacagttataccgagacactgacacatttattgctggaagcacagatcagggcttcaagagaaacttgtcaaatccatcgtctcttagcagtaatggacactcagcatcaccaccacaaaaaacacgattacagaaatcaaggaaaaagcccagggaggaaccttctgcacaaagccaagttgtaaccatcaaagtcaaaggacgtgttcacacttatcatcacacatcagagttagataattatacaattgacgacactccagtggcacctcctgattccaagctacaactgtcctgggtaagaatatttagatatggataccatggcaaagacagttataataatttacatatcttgccatctggagagatgctttacttcgttgccacaatggtggtgatatacaacaagacggccaacacccagcggcattatactggacatgctgatgatattaaatgcatggctgtccatcctaaccaatggtacatagcaacaggacaagcatctggtttgtcagttgatcaaaatgaacttagtcatatccgtatttgggatgctgagactcttatcaccctagctgttctggcactacaggagtacagtcttagtatttcctgcctggcattttctcaagaggataatggaagacaactggcttgcgtggatgcattagatgacgagtatcatctcactgtgtgggaatgggaagaaaggacaatcacacaacaaagcaagggccaatccagtgctattgtggccgtggtgtttgatccagatgacagtaagactcttgtgacctgtgggaaggaacacatttacttctggaggcttcacaacacaagactagagagaaagaatggctattttgagaaatatgagatcccacaatacttcacatgcttagagttttcacccaatggagatgtcatcactggggactcaaatggttcaatcaccgtttggggaaaagtatcaaagaagatcaagtttgctgtaagaaatgcacatgagaaaagcattttgagcttacagctgttagaaaatgggacattattaagtggtggcttggatggcaaactggcagcatgggatgctaataaatattttaatacaccattacaagaaacccagctggacagtggtttgggtggaatctgtgctattgaaccactgcatacaggccatggagatgatgtcaacgttcttattggagttacaaataacagcattgttgaaggctctctaaactctccttttcatccagttgttcagagtcataaagatgaggttcatgccctggcagtgcaccctaatgaagcacagtttatcagcgcatctcaggaccactctgtttctttgtgggatgctgaaacccaccaagttatttggacagttgatgtcgagtttcctgtcaagtcagcagatttctactccactggtgatgtattggcattaggaacttctgcgggaagatggattgtattgtcatgtgaatctggcatgcatattgcttcattccaagatggcacatcccctctgtctgatctggaatatgcaaaagatggagaacacattgcagttgcatcgcatgatggaaatatttatgttcatgcagtttatgatgaagggacaacttacagaagagtgggctgctgttcgggccacagtgaaccaatcatgtttctggactggtctcttgatggctgcttccttcaaagtttgtccactgattatgagcatattgtttgggagattggtggatttcaaagagaagaatcacaggatgtcattcgtgatgttgactggtccacaagaaatgtcatgctgggatacgatattgcaggtgtgtggccttctcagccagatgatgggaacttggtgaacagttctgatctgtcctggtcacgagaagtttttgctgttggagatgagttaggatacattcgtttgtttagattcccatgtagtcagcctggggctcactatcaccagtggcgaggtcacagctgtccggtcacacgcatgctgtttttagcgtcagatacccaccttattacaactggcagtcgtgatatctgcatccttcagtggtcaatggagggaaggcttcctgtagttaatgaggaagaggagtatgacatgcagactgacatgaccccggctggtaggcgtcaaaagggcagccacgtacattcagacaatgagagctaccattcagactatagcattgatgatcaagaggatgatgactatgaatattccaaaaatgttgctagagaaaaacaggcaagaggtcggcagcgactctctgacaacagccgttattctgatgcagcagattctttgccacaacaagcacctcaaggtcatgaacggccatcaaggaagagtcgtcatcaaaatcatcaaggagatgatgatagcagagctgtgggaagaagcccaagacgtaaccttccagctcaagacaccaggtcacagcaaggatcatatgcagaaaggtttaataaacacaaagctgctagcaaagcatatccacagcaagagcctgaagatatgggtcactactctgacgaagaaagcccaagacagcgtcaagggcagggggatagaggtgggggaaggagccgccaccctgctagaggacagggtaggcagtgggaaaggagaccaatgagatag

Transcript

evm.model.Ap6.19

GGACTTAAGATGTCTTATCGCGGACGCGGTTACAGTAATTTTCAACAACAGCGTCGGGCATTGCCGAATGGCGCTAGTCATCGCGGACGGCCTTTTCCTGCCGACAGTAACAGCGATTTGGAGGACAACGATCACGTTAGACTTCCTGAAATTGATAGAGATGTAAGAGAAAGAAGACCTCAGAAGAGAGATGGTAAACTTAATAGTCGCATTCCTTTACCAGCAAGGAATAACGAAGCCATTGGAAACCCTCCTGTTGGCGACCCTCGGCGGCCACGAAATCCTCCAGAATTTCCTAATAATTCTAGCTCTGATCCAGCAGGAAAAGATCAGCGAAAAAGCAGAGTAAATGCTGTGAAAAGAGTTACGTTTTACCGTAATGGGGATAAACATTTCAAAGGTGTCGAGATGGTTGTGACTAGGCAACGATATCGATCTTTCGACACCATTGTTGAAGACCTATCAAAAGCGATTCCACTTCCGTACGGAGTGAGAAATGTTTTTTCGCCTGGTGGAAGTTCAATTACAACTATTAACCAGTTAGAGGATGGAAGACATTATATCTGTTCTTCAGGAGACCAGCTTATAAAAAATGTGAACTACGGTCAAAAGCAGAAAGACAAGGCTCGCTCGCTTGATGTCGAAACTTTGTCTGATGGCTCTTCGTTGTCTTCGTCAAGTAGAGATTCGAAGTTTGGCGGGAGCAATTCTGACGGAAATCCGAAACCGCGGGTTATAACAATCCTCAGTGAGTACGATAAAAACAAGAAATGTAAAATCTTGTTAAACAGAAAGACGGTAAAAAGCTTCGAAGACGTTTTAAAGGACATTTCTGACATGTTGAAGTACTCAGTTAAAGAACTGCGCACTTTGGAAGGAACCAAGGTGAAAGGTCTCTCACAGTTATACCGAGACACTGACACATTTATTGCTGGAAGCACAGATCAGGGCTTCAAGAGAAACTTGTCAAATCCATCGTCTCTTAGCAGTAATGGACACTCAGCATCACCACCACAAAAAACACGATTACAGAAATCAAGGAAAAAGCCCAGGGAGGAACCTTCTGCACAAAGCCAAGTTGTAACCATCAAAGTCAAAGGACGTGTTCACACTTATCATCACACATCAGAGTTAGATAATTATACAATTGACGACACTCCAGTGGCACCTCCTGATTCCAAGCTACAACTGTCCTGGGTAAGAATATTTAGATATGGATACCATGGCAAAGACAGTTATAATAATTTACATATCTTGCCATCTGGAGAGATGCTTTACTTCGTTGCCACAATGGTGGTGATATACAACAAGACGGCCAACACCCAGCGGCATTATACTGGACATGCTGATGATATTAAATGCATGGCTGTCCATCCTAACCAATGGTACATAGCAACAGGACAAGCATCTGGTTTGTCAGTTGATCAAAATGAACTTAGTCATATCCGTATTTGGGATGCTGAGACTCTTATCACCCTAGCTGTTCTGGCACTACAGGAGTACAGTCTTAGTATTTCCTGCCTGGCATTTTCTCAAGAGGATAATGGAAGACAACTGGCTTGCGTGGATGCATTAGATGACGAGTATCATCTCACTGTGTGGGAATGGGAAGAAAGGACAATCACACAACAAAGCAAGGGCCAATCCAGTGCTATTGTGGCCGTGGTGTTTGATCCAGATGACAGTAAGACTCTTGTGACCTGTGGGAAGGAACACATTTACTTCTGGAGGCTTCACAACACAAGACTAGAGAGAAAGAATGGCTATTTTGAGAAATATGAGATCCCACAATACTTCACATGCTTAGAGTTTTCACCCAATGGAGATGTCATCACTGGGGACTCAAATGGTTCAATCACCGTTTGGGGAAAAGTATCAAAGAAGATCAAGTTTGCTGTAAGAAATGCACATGAGAAAAGCATTTTGAGCTTACAGCTGTTAGAAAATGGGACATTATTAAGTGGTGGCTTGGATGGCAAACTGGCAGCATGGGATGCTAATAAATATTTTAATACACCATTACAAGAAACCCAGCTGGACAGTGGTTTGGGTGGAATCTGTGCTATTGAACCACTGCATACAGGCCATGGAGATGATGTCAACGTTCTTATTGGAGTTACAAATAACAGCATTGTTGAAGGCTCTCTAAACTCTCCTTTTCATCCAGTTGTTCAGAGTCATAAAGATGAGGTTCATGCCCTGGCAGTGCACCCTAATGAAGCACAGTTTATCAGCGCATCTCAGGACCACTCTGTTTCTTTGTGGGATGCTGAAACCCACCAAGTTATTTGGACAGTTGATGTCGAGTTTCCTGTCAAGTCAGCAGATTTCTACTCCACTGGTGATGTATTGGCATTAGGAACTTCTGCGGGAAGATGGATTGTATTGTCATGTGAATCTGGCATGCATATTGCTTCATTCCAAGATGGCACATCCCCTCTGTCTGATCTGGAATATGCAAAAGATGGAGAACACATTGCAGTTGCATCGCATGATGGAAATATTTATGTTCATGCAGTTTATGATGAAGGGACAACTTACAGAAGAGTGGGCTGCTGTTCGGGCCACAGTGAACCAATCATGTTTCTGGACTGGTCTCTTGATGGCTGCTTCCTTCAAAGTTTGTCCACTGATTATGAGCATATTGTTTGGGAGATTGGTGGATTTCAAAGAGAAGAATCACAGGATGTCATTCGTGATGTTGACTGGTCCACAAGAAATGTCATGCTGGGATACGATATTGCAGGTGTGTGGCCTTCTCAGCCAGATGATGGGAACTTGGTGAACAGTTCTGATCTGTCCTGGTCACGAGAAGTTTTTGCTGTTGGAGATGAGTTAGGATACATTCGTTTGTTTAGATTCCCATGTAGTCAGCCTGGGGCTCACTATCACCAGTGGCGAGGTCACAGCTGTCCGGTCACACGCATGCTGTTTTTAGCGTCAGATACCCACCTTATTACAACTGGCAGTCGTGATATCTGCATCCTTCAGTGGTCAATGGAGGGAAGGCTTCCTGTAGTTAATGAGGAAGAGGAGTATGACATGCAGACTGACATGACCCCGGCTGGTAGGCGTCAAAAGGGCAGCCACGTACATTCAGACAATGAGAGCTACCATTCAGACTATAGCATTGATGATCAAGAGGATGATGACTATGAATATTCCAAAAATGTTGCTAGAGAAAAACAGGCAAGAGGTCGGCAGCGACTCTCTGACAACAGCCGTTATTCTGATGCAGCAGATTCTTTGCCACAACAAGCACCTCAAGGTCATGAACGGCCATCAAGGAAGAGTCGTCATCAAAATCATCAAGGAGATGATGATAGCAGAGCTGTGGGAAGAAGCCCAAGACGTAACCTTCCAGCTCAAGACACCAGGTCACAGCAAGGATCATATGCAGAAAGGTTTAATAAACACAAAGCTGCTAGCAAAGCATATCCACAGCAAGAGCCTGAAGATATGGGTCACTACTCTGACGAAGAAAGCCCAAGACAGCGTCAAGGGCAGGGGGATAGAGGTGGGGGAAGGAGCCGCCACCCTGCTAGAGGACAGGGTAGGCAGTGGGAAAGGAGACCAATGAGATAG

Protein

Uniprot

Gene family

Uniprot term	Description
O00423	Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens OX=9606 GN=EML1 PE=1 SV=3
Q05BC3	Echinoderm microtubule-associated protein-like 1 OS=Mus musculus OX=10090 GN=Eml1 PE=1 SV=1
Q4V8C3	Echinoderm microtubule-associated protein-like 1 OS=Rattus norvegicus OX=10116 GN=Eml1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03451	HELP	HELP motif	Repeat	Interproscan
PF03607	DCX	Doublecortin	Family	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR003533	Domain	Doublecortin domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036572	Homologous_superfamily	Doublecortin domain superfamily	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0072686	Cellular Component	mitotic spindle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala