Gene detail

Detailed information of evm.model.Ap6.3120 in Astrangia poculata

Genomic Location: Ap6:31986869...32016129
NR annotation: CAH3120603.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap6.3120

atgggcagcaccagcagtaaggaagatccggtaattacagatcgactgagggccgaagacttcgtctttacaaagggagctttgataagtctctgtgaagacgactacattcacttgtggaatttacgacaggcacaacctgcccttgtgcagtctttaagatttaatagagaaaaaaaatgtaaaacccacccaggtccagttgtacatataagtggtaatcctgtggaccctaataagttgcttttaggttttgaatctggaacagttgttgtttggtccctcagagggaaaacagcagaacacagatgtatttgttctcagtctgtgatctctgcatattggttgaatgatggaaaacagtttatttgctctcacactgatggtaccctaacagtatggaaccttaaaaacagtgacaaaccagtggacacattaattccacataatgtacaagatccaagagctgttgttgtgttaacgccagtgaaactcttggtgtttgacttactttcatcatctgcaaagccgtcatcatttgaagttccctacacattcaacatacacgagtctccagtgacttgtacacaattttgtagtgattgtcctcgggattttattatggctctggaatcaacagcaagtagccgcacacgtaaaaggcagttacagaggggagaaagcacccaggcatggcccatagctggtggaatcttaggagaatcaccggagtttgctacaggctctgagctcgttatcactggtcattcagatgggtctgtaaagttctgggaggcctcgtcagctgtcttgagatgtctctacaaactgtcaacaagcaaagtatttgagaagaacacaagtcaacccgagagcagtgaaacaaatggtaaagatggccagtctgaaggcaacggcagcacaagcagtgaacagtcaccgccttcaatggttgacattgactgctatgctgtcaacatgatagagctgtgtatcagaagtcggacacttctagtggctggcactagccatgttatagtctaccagtttagcactgtggaagagacactagaatttgtgcaacttgacatcaatcttttgtttgacctgggtatggatttgctaccagactccgaggtccaaagcccgactgaggataaaggagaggaactggtactcagtcccacctcagcctccatgactgtgtcatgtcccactcttacctgtaaaactggtttgtacaagaggtcgcctggatttcagcccactgtctgttgcatgattccatcagttggatcagacacagtaccactcagcaacatggctgttagctcagagtttggagtgatttctatcagcaatggaccctctttagcattggttgatatagttcaaaagaaactcattacagtgctgtcagcccaagatatgtgtgctgtgtcagaatccccgtcatcatcagcaaattcagcaacgatgcctgtgacaactggcatgcctatatcattcactatgaatgctgatggctcagggggggaattccacattgatcttaactcaaaatctgagagaaggaaaagccgtccccctcgaccacctcccccggtaagaaggcttaatagcaggcctgttagtggtggggatcagaacgagaatgaagctgttgatggcatacgaccaagaacaaccagtgtaccaaatttggaaagtggcccccctgacagcatcagctgtgtgcggtttgcctgcaccttcactaaaaagaatgacaatttaatcagtccgtgcttgtgggttggaacagtctttggaaatgtgtttgttgttgtgcttaacctgcctgtcagagaacaaagagagtcgcagcctgtgctaacaataaccacagggacgatatgtcagcccaaagcaggcatgattctcagcatggctatacttgacagtcagggacatctctttccttctccatttcagttctggaaagaaaaagattcacagcacaataagaggaactctttactgacaagggagttacttgacaaacactttgttgttatttgtacagacagagaagccaaggtgtattcattacccacaacccacgctaatcccaagactttctcagaagctaacctcactgacgactcggccgtgttactcaaggcagatgctgttgttgttcaaggtagtagctgcttgttgtgtcttaacagtcttggcaagctgctcgcgttaagcctgccgaacctgtcaccgttattggacgtggaatgctcgttcctcatgaaggactacagatttctcaggacgcttgtgttctctgaggatgcccaagcagttattttgtgttcaccgttcgaaattcagaggctttcaatgtttgcaaggccggggatgctgacagaaaaccagggatcattattccgtgcagtagagacacctgaacctccgagcaaaggtttctttagcagcttgttcagcactgctgcttcgccacttgatagagagcagctctttggcacagagagcgggaatgcgtctcgtagtttgactaatcggttcaatggccctggaatggagaagctgcaagagacgtccagcggattagctggtgttgtggccaggaacaaacaggctcttatggagagaggtgaaaaactctcggagctggagatgaagactggagaaatgaatattcgtgccaaggccttcgcggacgccgcccatcaactgtcgcgccaatacaaggataagaagtggtaccagctgataaagcaagctcaggagtataagaagcagtgtgagctcttaacaaagcaggaagcagagatgaaatcacagcttgcaatgtatgcagagcgatttgaagaattccaaaaaacccttaacaagagcaatgaagtcttttcaacttttaagaaggaaatggataagatgacaaagacaattaaaaaacttgaaaaggaaaaactaacgtggaaaacgaagtgcgagaatggtaaccggtcattggtgcaaatggtggatgagcgtgaaaaacagaaaaacgaaatggccgctctgcgattaaagaatgaaaagcttgaaaacctttgccgagcgctgcacaaaggagctaaagtaacagccggtgacatcgatcagaccaaggaaaccagtaccgcgaattctgataaagaaatcgaatcttcatctggtgaagagagaatacgtgatgaaaacgaacaaagcacaagtgccgcagaaatatcgagtaaacacacacttgaagcgtcagaggatgtaacaggcgaggaaaacaaaaaacacagtgaagaacaacactcgaagaattctgatggcgactcgagtaatggagttcaagaacccggggctgaaaattcgaatgaattcgacgattctccgactgattccgagacaacgccgaccgtgcccgctgatacaccgagaaattccgaagaagttccggcggagtccgaaaaagtgagttccaccgaaactgcttcagttgtgaatgacgagagtactagccctgatgttgtagacagttga

Transcript

evm.model.Ap6.3120

ATGGGCAGCACCAGCAGTAAGGAAGATCCGGTAATTACAGATCGACTGAGGGCCGAAGACTTCGTCTTTACAAAGGGAGCTTTGATAAGTCTCTGTGAAGACGACTACATTCACTTGTGGAATTTACGACAGGCACAACCTGCCCTTGTGCAGTCTTTAAGATTTAATAGAGAAAAAAAATGTAAAACCCACCCAGGTCCAGTTGTACATATAAGTGGTAATCCTGTGGACCCTAATAAGTTGCTTTTAGGTTTTGAATCTGGAACAGTTGTTGTTTGGTCCCTCAGAGGGAAAACAGCAGAACACAGATGTATTTGTTCTCAGTCTGTGATCTCTGCATATTGGTTGAATGATGGAAAACAGTTTATTTGCTCTCACACTGATGGTACCCTAACAGTATGGAACCTTAAAAACAGTGACAAACCAGTGGACACATTAATTCCACATAATGTACAAGATCCAAGAGCTGTTGTTGTGTTAACGCCAGTGAAACTCTTGGTGTTTGACTTACTTTCATCATCTGCAAAGCCGTCATCATTTGAAGTTCCCTACACATTCAACATACACGAGTCTCCAGTGACTTGTACACAATTTTGTAGTGATTGTCCTCGGGATTTTATTATGGCTCTGGAATCAACAGCAAGTAGCCGCACACGTAAAAGGCAGTTACAGAGGGGAGAAAGCACCCAGGCATGGCCCATAGCTGGTGGAATCTTAGGAGAATCACCGGAGTTTGCTACAGGCTCTGAGCTCGTTATCACTGGTCATTCAGATGGGTCTGTAAAGTTCTGGGAGGCCTCGTCAGCTGTCTTGAGATGTCTCTACAAACTGTCAACAAGCAAAGTATTTGAGAAGAACACAAGTCAACCCGAGAGCAGTGAAACAAATGGTAAAGATGGCCAGTCTGAAGGCAACGGCAGCACAAGCAGTGAACAGTCACCGCCTTCAATGGTTGACATTGACTGCTATGCTGTCAACATGATAGAGCTGTGTATCAGAAGTCGGACACTTCTAGTGGCTGGCACTAGCCATGTTATAGTCTACCAGTTTAGCACTGTGGAAGAGACACTAGAATTTGTGCAACTTGACATCAATCTTTTGTTTGACCTGGGTATGGATTTGCTACCAGACTCCGAGGTCCAAAGCCCGACTGAGGATAAAGGAGAGGAACTGGTACTCAGTCCCACCTCAGCCTCCATGACTGTGTCATGTCCCACTCTTACCTGTAAAACTGGTTTGTACAAGAGGTCGCCTGGATTTCAGCCCACTGTCTGTTGCATGATTCCATCAGTTGGATCAGACACAGTACCACTCAGCAACATGGCTGTTAGCTCAGAGTTTGGAGTGATTTCTATCAGCAATGGACCCTCTTTAGCATTGGTTGATATAGTTCAAAAGAAACTCATTACAGTGCTGTCAGCCCAAGATATGTGTGCTGTGTCAGAATCCCCGTCATCATCAGCAAATTCAGCAACGATGCCTGTGACAACTGGCATGCCTATATCATTCACTATGAATGCTGATGGCTCAGGGGGGGAATTCCACATTGATCTTAACTCAAAATCTGAGAGAAGGAAAAGCCGTCCCCCTCGACCACCTCCCCCGGTAAGAAGGCTTAATAGCAGGCCTGTTAGTGGTGGGGATCAGAACGAGAATGAAGCTGTTGATGGCATACGACCAAGAACAACCAGTGTACCAAATTTGGAAAGTGGCCCCCCTGACAGCATCAGCTGTGTGCGGTTTGCCTGCACCTTCACTAAAAAGAATGACAATTTAATCAGTCCGTGCTTGTGGGTTGGAACAGTCTTTGGAAATGTGTTTGTTGTTGTGCTTAACCTGCCTGTCAGAGAACAAAGAGAGTCGCAGCCTGTGCTAACAATAACCACAGGGACGATATGTCAGCCCAAAGCAGGCATGATTCTCAGCATGGCTATACTTGACAGTCAGGGACATCTCTTTCCTTCTCCATTTCAGTTCTGGAAAGAAAAAGATTCACAGCACAATAAGAGGAACTCTTTACTGACAAGGGAGTTACTTGACAAACACTTTGTTGTTATTTGTACAGACAGAGAAGCCAAGGTGTATTCATTACCCACAACCCACGCTAATCCCAAGACTTTCTCAGAAGCTAACCTCACTGACGACTCGGCCGTGTTACTCAAGGCAGATGCTGTTGTTGTTCAAGGTAGTAGCTGCTTGTTGTGTCTTAACAGTCTTGGCAAGCTGCTCGCGTTAAGCCTGCCGAACCTGTCACCGTTATTGGACGTGGAATGCTCGTTCCTCATGAAGGACTACAGATTTCTCAGGACGCTTGTGTTCTCTGAGGATGCCCAAGCAGTTATTTTGTGTTCACCGTTCGAAATTCAGAGGCTTTCAATGTTTGCAAGGCCGGGGATGCTGACAGAAAACCAGGGATCATTATTCCGTGCAGTAGAGACACCTGAACCTCCGAGCAAAGGTTTCTTTAGCAGCTTGTTCAGCACTGCTGCTTCGCCACTTGATAGAGAGCAGCTCTTTGGCACAGAGAGCGGGAATGCGTCTCGTAGTTTGACTAATCGGTTCAATGGCCCTGGAATGGAGAAGCTGCAAGAGACGTCCAGCGGATTAGCTGGTGTTGTGGCCAGGAACAAACAGGCTCTTATGGAGAGAGGTGAAAAACTCTCGGAGCTGGAGATGAAGACTGGAGAAATGAATATTCGTGCCAAGGCCTTCGCGGACGCCGCCCATCAACTGTCGCGCCAATACAAGGATAAGAAGTGGTACCAGCTGATAAAGCAAGCTCAGGAGTATAAGAAGCAGTGTGAGCTCTTAACAAAGCAGGAAGCAGAGATGAAATCACAGCTTGCAATGTATGCAGAGCGATTTGAAGAATTCCAAAAAACCCTTAACAAGAGCAATGAAGTCTTTTCAACTTTTAAGAAGGAAATGGATAAGATGACAAAGACAATTAAAAAACTTGAAAAGGAAAAACTAACGTGGAAAACGAAGTGCGAGAATGGTAACCGGTCATTGGTGCAAATGGTGGATGAGCGTGAAAAACAGAAAAACGAAATGGCCGCTCTGCGATTAAAGAATGAAAAGCTTGAAAACCTTTGCCGAGCGCTGCACAAAGGAGCTAAAGTAACAGCCGGTGACATCGATCAGACCAAGGAAACCAGTACCGCGAATTCTGATAAAGAAATCGAATCTTCATCTGGTGAAGAGAGAATACGTGATGAAAACGAACAAAGCACAAGTGCCGCAGAAATATCGAGTAAACACACACTTGAAGCGTCAGAGGATGTAACAGGCGAGGAAAACAAAAAACACAGTGAAGAACAACACTCGAAGAATTCTGATGGCGACTCGAGTAATGGAGTTCAAGAACCCGGGGCTGAAAATTCGAATGAATTCGACGATTCTCCGACTGATTCCGAGACAACGCCGACCGTGCCCGCTGATACACCGAGAAATTCCGAAGAAGTTCCGGCGGAGTCCGAAAAAGTGAGTTCCACCGAAACTGCTTCAGTTGTGAATGACGAGAGTACTAGCCCTGATGTTGTAGACAGTTGA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9WU70	Syntaxin-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Stxbp5 PE=1 SV=1
Q5T5C0	Syntaxin-binding protein 5 OS=Homo sapiens OX=9606 GN=STXBP5 PE=1 SV=1
Q8K400	Syntaxin-binding protein 5 OS=Mus musculus OX=10090 GN=Stxbp5 PE=1 SV=3

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF09728	Taxilin	Myosin-like coiled-coil protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042855	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR026183	Family	Taxilin family	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR000664	Family	Lethal(2) giant larvae protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0017157	Biological Process	regulation of exocytosis	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0045159	Molecular Function	myosin II binding	Interproscan
GO:0050708	Biological Process	regulation of protein secretion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala