Gene detail

Detailed information of evm.model.Ap6.74 in Astrangia poculata

Genomic Location: Ap6:650380...663406
NR annotation: KAJ7393562.1, EGF domain [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap6.74

atgggttggtccgaagaggtcagcaagaactctcactgtcttatgaaggatgatattgcatcttgcaagtgtgattttggatattttggaagatggagggatccttactgcatgtcttcagcgacaataggtggaaagtatccttgtctgacgaacaaacactgccctacatattctcattgtgttaacaacttgtgcgcttgtcgttatgagtatcatggagacggggagaaatgcacagcatatgcacctccagcctgtacctacgataaagattgtcctgggaaaccgagtagctttgaaaaggcaaagtgtattgaacgaacatgtcgctgtgttggaatgtacgctggaaacggatactactgcagagcggcgaagtcctgtccgcatatggcgaaaaaatgcggcagtaacgcttattgcatgatcgatcccttgcatccaaaatctcacctttgtgcatgtaaagaaggcttttggaaagacaagaatggaaactgtgtagattgttttaccaacagacaatgccggcagcgctattctatatgtattaaagggaagtgcgggtgcaaggaagagcttagactgggcaagacaaaatgcgaagctgcgccttttcacaaatgcaaaacagactatgattgccattctcgggcgaaatgcgaacgaggaagatgtatttgtcaaggaaaatacgtcggaaatgggaaatactgcagagagggaaaaccctgtccaaacaagaaatgtagtcgcgctacctgtctgatagatcctttgatggtcagggacattcactgcaaatgtaacgccggtttttactatagcaacactggaaaatcatgtgtaggcgagtgcttttataagtgtcttgccaatgttgactgcaattatgatgagaactcaggcaaatgtgttaatggagaatgcaagtgtaaagatgagctgataagggaagggaaggaatgcaaacctgcacccatccaagtgtgcagagcagattttgactgcgatgctaaggccaaatgcctgaaaggtaaatgtatctgtcaaggatggtatattggaaatggaaaatattgcagagcatcgcggccatgtgatcacacgaagaatcattgtggtagtcatggtgtatgtcttcttgaccccttgcttcttaaaagacctcattgcagatgcgaggagggttacaaagtcttcaatgaaagtggaaagtgtcttgaatgttcgtccaataaagagtgcaacacgaattattccacgtgcgtagatggcgagtgcaagtgcatggatgaactcatcaaggacggaaagacttgcaggcatccacgtttacatctgtgcgaattgcaaaatgattgtcataggaacgccaaatgtgttatgaaaaggtgctattgtcaaggccatacaactggaaacggactcttttgtaggaattcgctgtcatgtccaaaggagtttcggtgtggtaaacactcgacttgtgttgtggatccattgtttcctcaaacgcctgactgcaagtgtgatccaggatataaaaaatccaatggatcgtgtgttgaaatgagcaattgtgaaaagaaaggtctggagtgccctgatggcgcaatatgtggagtagtatcaggtggaaccatgggatgtatttgtgagaaaggttacaagacgatcttcaaaaacgatcaattgacttgtgaagatattgatgaatgcgccacaggcaaggccagatgctcaggcaaccgctgtacaaacactattggctcatacacttgtattccgtgtccatctggatttactgatggggcgaacggattatgtattggaacgtttaaatgtaagtgcaaaaaacatgaagtgtgtcgtcgtggaaaatgtaaatgcaagactggttacaaacgaactaaacaagggcagtgtattggaggtaatcatgatgggcttggagttcaacccagttctgggaattcttctcatttcgcatgtcacctgagcgtctttatggcccttggtttgcttggacgcctggccttttcaaccaaagaagagtaa

Transcript

evm.model.Ap6.74

ATGGGTTGGTCCGAAGAGGTCAGCAAGAACTCTCACTGTCTTATGAAGGATGATATTGCATCTTGCAAGTGTGATTTTGGATATTTTGGAAGATGGAGGGATCCTTACTGCATGTCTTCAGCGACAATAGGTGGAAAGTATCCTTGTCTGACGAACAAACACTGCCCTACATATTCTCATTGTGTTAACAACTTGTGCGCTTGTCGTTATGAGTATCATGGAGACGGGGAGAAATGCACAGCATATGCACCTCCAGCCTGTACCTACGATAAAGATTGTCCTGGGAAACCGAGTAGCTTTGAAAAGGCAAAGTGTATTGAACGAACATGTCGCTGTGTTGGAATGTACGCTGGAAACGGATACTACTGCAGAGCGGCGAAGTCCTGTCCGCATATGGCGAAAAAATGCGGCAGTAACGCTTATTGCATGATCGATCCCTTGCATCCAAAATCTCACCTTTGTGCATGTAAAGAAGGCTTTTGGAAAGACAAGAATGGAAACTGTGTAGATTGTTTTACCAACAGACAATGCCGGCAGCGCTATTCTATATGTATTAAAGGGAAGTGCGGGTGCAAGGAAGAGCTTAGACTGGGCAAGACAAAATGCGAAGCTGCGCCTTTTCACAAATGCAAAACAGACTATGATTGCCATTCTCGGGCGAAATGCGAACGAGGAAGATGTATTTGTCAAGGAAAATACGTCGGAAATGGGAAATACTGCAGAGAGGGAAAACCCTGTCCAAACAAGAAATGTAGTCGCGCTACCTGTCTGATAGATCCTTTGATGGTCAGGGACATTCACTGCAAATGTAACGCCGGTTTTTACTATAGCAACACTGGAAAATCATGTGTAGGCGAGTGCTTTTATAAGTGTCTTGCCAATGTTGACTGCAATTATGATGAGAACTCAGGCAAATGTGTTAATGGAGAATGCAAGTGTAAAGATGAGCTGATAAGGGAAGGGAAGGAATGCAAACCTGCACCCATCCAAGTGTGCAGAGCAGATTTTGACTGCGATGCTAAGGCCAAATGCCTGAAAGGTAAATGTATCTGTCAAGGATGGTATATTGGAAATGGAAAATATTGCAGAGCATCGCGGCCATGTGATCACACGAAGAATCATTGTGGTAGTCATGGTGTATGTCTTCTTGACCCCTTGCTTCTTAAAAGACCTCATTGCAGATGCGAGGAGGGTTACAAAGTCTTCAATGAAAGTGGAAAGTGTCTTGAATGTTCGTCCAATAAAGAGTGCAACACGAATTATTCCACGTGCGTAGATGGCGAGTGCAAGTGCATGGATGAACTCATCAAGGACGGAAAGACTTGCAGGCATCCACGTTTACATCTGTGCGAATTGCAAAATGATTGTCATAGGAACGCCAAATGTGTTATGAAAAGGTGCTATTGTCAAGGCCATACAACTGGAAACGGACTCTTTTGTAGGAATTCGCTGTCATGTCCAAAGGAGTTTCGGTGTGGTAAACACTCGACTTGTGTTGTGGATCCATTGTTTCCTCAAACGCCTGACTGCAAGTGTGATCCAGGATATAAAAAATCCAATGGATCGTGTGTTGAAATGAGCAATTGTGAAAAGAAAGGTCTGGAGTGCCCTGATGGCGCAATATGTGGAGTAGTATCAGGTGGAACCATGGGATGTATTTGTGAGAAAGGTTACAAGACGATCTTCAAAAACGATCAATTGACTTGTGAAGATATTGATGAATGCGCCACAGGCAAGGCCAGATGCTCAGGCAACCGCTGTACAAACACTATTGGCTCATACACTTGTATTCCGTGTCCATCTGGATTTACTGATGGGGCGAACGGATTATGTATTGGAACGTTTAAATGTAAGTGCAAAAAACATGAAGTGTGTCGTCGTGGAAAATGTAAATGCAAGACTGGTTACAAACGAACTAAACAAGGGCAGTGTATTGGAGGTAATCATGATGGGCTTGGAGTTCAACCCAGTTCTGGGAATTCTTCTCATTTCGCATGTCACCTGAGCGTCTTTATGGCCCTTGGTTTGCTTGGACGCCTGGCCTTTTCAACCAAAGAAGAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01683	EB	EB module	Family	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051146	Family	Phosphatidylserine Receptors and Protein Disulfide Isomerases	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR006149	Domain	EB domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24038	STABILIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan