Gene detail

Detailed information of evm.model.Ap7.185 in Astrangia poculata

Genomic Location: Ap7:2389104...2411613
NR annotation: CAH3130938.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap7.185

atggtcgccgaatggatttcttgccttgaaaagagacctacagacagaacaggagaagatctcgatattatttattccagactgaaggacctgaaagctttagaacaatttcattgcacagttcttctgcagatctgttattatgcatgttatcaagacctggaggagggaataacattatttcgtcagggtgatattggctgctactggtacgcagtgctcactgggacgcttgatgtcaaagtatccaaaacaggaaaaactgaggatgctgaaaccatttgcagtctgggacctggaaaggtattcggcgagtcagtcctggacgattcaccaaggcacgccacagttattaccagcgaattttgtgagttgttgttagtggaaaagaaatatttccgtaccatttgggagcgtaacaagcgatatttagaagatataatagccagtccaacgtcttccttccttggaacgcaagaaaagaatggaaagcctcctgatgataacagttcagacgagaaacacttctttgctatgattgcctatcccactgaagccttgatggaggccggcctggtcctacgcaacaaaatgcttcttcatcaatccccaagactcatgcgtgatcgaaagcataataatgttttaatgagtaggagctttattggatcagaagcagtagattggctgacaaaggtcagtccaatagttcatggccgttttcacgctaatgctatgctacaggcgctcctggaagtgggtgtcatcgttcacgtggaccatgagtgcgaattcaaagacacagatactctttatcagtttgctgttgatatgaataaaggtcagaagcctggtgacgagacatacagtgaagaggacctagttgatgtattgatcatgctcagtaggtctgggcccgatgctcagctcagaatggcgctgcgaaaaccttccaatgagagaactcaggatgatttgtcgttaatttatgatgaacttgtgcacataaaggcttttcagcatctttcgactatggttaaaaaagaattagcttctgcttttgtcttagaatctcatgacagaaaaggaactgtgatgtttaacgaaggggaagaaggcatgtcatggttcattatcctaaagggctccgtgaatgtagtggttcatggaaagggcgtggtatgccagctgaacgagggagatgactttggaaaacttgctcttgtcaataacgctctaaggacggccacaatagaaacttctcaggacaattgtcatttcttgcggataggaaaggaagattttaacagaatcctcagggacgttgacacgaacacagttcgtcttaaagaacatggtcaagacgttcttgtcttagaaaagatgaacattgcttccatatttgcaaacgaaggactccgagcgtctcaaacgcagaaagtcgtccaaatggcgcttcgctggtgttatttggcgggaaatctatttttggaagaaaaaagtatttgcatgtttgttgagaaactgatgagatcgttggaacaggatgagctacttaatgagttttttctacttaggacagcaatactcaagcttcatgaaagatttcccgatgatgtagttacagatggttctttgactgctccaaagggccgttctcaacatcggcgtatggggctcgccgatattacacagggcctaacggagtataaatcaatccgaggaaccgaccaaaatattttccgtgtgttctgtgctgatcacacatataccacagtagcattaccatataacgctacagctcagaccattgttaataccgcggaagaacgtgtactgttgggcgatgactgcgttctgtgtgaggttaaatcttcgggagagcgcgtcccatttaagccacacgaaatttgtgtcacgacaggattaagtgttaacggaagactcttcatcgcgccacgagaacacttggactcattgacccccactcctgatcaagaaggaccaacaagcagtaatctcacattcctggagtcagcaagttctaaagagctcgcgtattacatttcacagtacgactacgagctctttaatgccgtgaatattcatgaatttatttttaacatttttgggaaagagaacttcaaccagataacagcgaaccttgatttgctgctcaaacggttcaatgaggtgcagttgtgggtcgaaacacagattctactcacacagcaacttaacaaaagagtttatttgttgaaaaagttcatcaaaattgccgcgcactgtaaggaataccataactggtattcgttctttgctattgttatgggactcaatagtgttgtagtgagccgcttgtcacaaacatgggagaaattaccaggcaagttcaggaaaatctatgaggagtttgaaactaccttggagccatccagaaaccatcgcgtttatcgacttttagctggaaagatgaaacctcccatcttaccatttatgccacttctgatgaaagacatgacatttacagatataggaaacaaaacacaatttgataatctggtgaattttgagaaaatggctgaacctccatctcaagtgaaaatggctcaagaaatcaccatttttgtgagaaacttacacgtgatcgacaaccagcgcgctcttacccagctctctcacagaatagagccaagaaaaacatga

Transcript

evm.model.Ap7.185

ATGGTCGCCGAATGGATTTCTTGCCTTGAAAAGAGACCTACAGACAGAACAGGAGAAGATCTCGATATTATTTATTCCAGACTGAAGGACCTGAAAGCTTTAGAACAATTTCATTGCACAGTTCTTCTGCAGATCTGTTATTATGCATGTTATCAAGACCTGGAGGAGGGAATAACATTATTTCGTCAGGGTGATATTGGCTGCTACTGGTACGCAGTGCTCACTGGGACGCTTGATGTCAAAGTATCCAAAACAGGAAAAACTGAGGATGCTGAAACCATTTGCAGTCTGGGACCTGGAAAGGTATTCGGCGAGTCAGTCCTGGACGATTCACCAAGGCACGCCACAGTTATTACCAGCGAATTTTGTGAGTTGTTGTTAGTGGAAAAGAAATATTTCCGTACCATTTGGGAGCGTAACAAGCGATATTTAGAAGATATAATAGCCAGTCCAACGTCTTCCTTCCTTGGAACGCAAGAAAAGAATGGAAAGCCTCCTGATGATAACAGTTCAGACGAGAAACACTTCTTTGCTATGATTGCCTATCCCACTGAAGCCTTGATGGAGGCCGGCCTGGTCCTACGCAACAAAATGCTTCTTCATCAATCCCCAAGACTCATGCGTGATCGAAAGCATAATAATGTTTTAATGAGTAGGAGCTTTATTGGATCAGAAGCAGTAGATTGGCTGACAAAGGTCAGTCCAATAGTTCATGGCCGTTTTCACGCTAATGCTATGCTACAGGCGCTCCTGGAAGTGGGTGTCATCGTTCACGTGGACCATGAGTGCGAATTCAAAGACACAGATACTCTTTATCAGTTTGCTGTTGATATGAATAAAGGTCAGAAGCCTGGTGACGAGACATACAGTGAAGAGGACCTAGTTGATGTATTGATCATGCTCAGTAGGTCTGGGCCCGATGCTCAGCTCAGAATGGCGCTGCGAAAACCTTCCAATGAGAGAACTCAGGATGATTTGTCGTTAATTTATGATGAACTTGTGCACATAAAGGCTTTTCAGCATCTTTCGACTATGGTTAAAAAAGAATTAGCTTCTGCTTTTGTCTTAGAATCTCATGACAGAAAAGGAACTGTGATGTTTAACGAAGGGGAAGAAGGCATGTCATGGTTCATTATCCTAAAGGGCTCCGTGAATGTAGTGGTTCATGGAAAGGGCGTGGTATGCCAGCTGAACGAGGGAGATGACTTTGGAAAACTTGCTCTTGTCAATAACGCTCTAAGGACGGCCACAATAGAAACTTCTCAGGACAATTGTCATTTCTTGCGGATAGGAAAGGAAGATTTTAACAGAATCCTCAGGGACGTTGACACGAACACAGTTCGTCTTAAAGAACATGGTCAAGACGTTCTTGTCTTAGAAAAGATGAACATTGCTTCCATATTTGCAAACGAAGGACTCCGAGCGTCTCAAACGCAGAAAGTCGTCCAAATGGCGCTTCGCTGGTGTTATTTGGCGGGAAATCTATTTTTGGAAGAAAAAAGTATTTGCATGTTTGTTGAGAAACTGATGAGATCGTTGGAACAGGATGAGCTACTTAATGAGTTTTTTCTACTTAGGACAGCAATACTCAAGCTTCATGAAAGATTTCCCGATGATGTAGTTACAGATGGTTCTTTGACTGCTCCAAAGGGCCGTTCTCAACATCGGCGTATGGGGCTCGCCGATATTACACAGGGCCTAACGGAGTATAAATCAATCCGAGGAACCGACCAAAATATTTTCCGTGTGTTCTGTGCTGATCACACATATACCACAGTAGCATTACCATATAACGCTACAGCTCAGACCATTGTTAATACCGCGGAAGAACGTGTACTGTTGGGCGATGACTGCGTTCTGTGTGAGGTTAAATCTTCGGGAGAGCGCGTCCCATTTAAGCCACACGAAATTTGTGTCACGACAGGATTAAGTGTTAACGGAAGACTCTTCATCGCGCCACGAGAACACTTGGACTCATTGACCCCCACTCCTGATCAAGAAGGACCAACAAGCAGTAATCTCACATTCCTGGAGTCAGCAAGTTCTAAAGAGCTCGCGTATTACATTTCACAGTACGACTACGAGCTCTTTAATGCCGTGAATATTCATGAATTTATTTTTAACATTTTTGGGAAAGAGAACTTCAACCAGATAACAGCGAACCTTGATTTGCTGCTCAAACGGTTCAATGAGGTGCAGTTGTGGGTCGAAACACAGATTCTACTCACACAGCAACTTAACAAAAGAGTTTATTTGTTGAAAAAGTTCATCAAAATTGCCGCGCACTGTAAGGAATACCATAACTGGTATTCGTTCTTTGCTATTGTTATGGGACTCAATAGTGTTGTAGTGAGCCGCTTGTCACAAACATGGGAGAAATTACCAGGCAAGTTCAGGAAAATCTATGAGGAGTTTGAAACTACCTTGGAGCCATCCAGAAACCATCGCGTTTATCGACTTTTAGCTGGAAAGATGAAACCTCCCATCTTACCATTTATGCCACTTCTGATGAAAGACATGACATTTACAGATATAGGAAACAAAACACAATTTGATAATCTGGTGAATTTTGAGAAAATGGCTGAACCTCCATCTCAAGTGAAAATGGCTCAAGAAATCACCATTTTTGTGAGAAACTTACACGTGATCGACAACCAGCGCGCTCTTACCCAGCTCTCTCACAGAATAGAGCCAAGAAAAACATGA

Protein

Uniprot

Uniprot term	Description
Q8WZA2	Rap guanine nucleotide exchange factor 4 OS=Homo sapiens OX=9606 GN=RAPGEF4 PE=1 SV=1
Q9EQZ6	Rap guanine nucleotide exchange factor 4 OS=Mus musculus OX=10090 GN=Rapgef4 PE=1 SV=1
O95398	Rap guanine nucleotide exchange factor 3 OS=Homo sapiens OX=9606 GN=RAPGEF3 PE=1 SV=6

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR000591	Domain	DEP domain	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04351	RAPGEF4, EPAC2; Rap guanine nucleotide exchange factor 4	-	Membrane trafficking	ko04131	deepkoala