Gene detail

Detailed information of evm.model.Ap8.1474 in Astrangia poculata

Genomic Location: Ap8:16626329...16643455
NR annotation: KAJ7371584.1, Hemicentin-1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap8.1474

atgaagcgtttaatccggtggcctgtcttcgcatgtatccttgtgggtctgcttcctatgtgcgcatgtttctcgtggacacaggaaccaaacaaacccacacaagcaagtccaggttccacaagtgttctccaatggaattttgagcctgccggcgacagtttctggtttcttttggtatccaggaacacttccacatcaaataattcaagtgaagaagacatcgcattaaaattatcaaatggaagcacacatgtttatgatgagttcaagagccgagcggagttgattaatcaggccactctggttttacacgacattaaagattccgacgtggggagatattgctgtaaggctttcttcatgcaaggaatgtacacaagttgtgtggatttattagttctggcaagtttttcgtggacacaggaaccaaacaaacccacacaagcaagtccaggttccactagtgttctccagtggaattttgagcctgccggcgacagtttctggtttcttttggtatccaggaacacttccacctcaagtaattcaagcgaagaagatatcgcattaaaactatcaaatggaagcacacatgtttatgatgagttcaagagccgagcggagttgattaaccaggccacccttgttttacacgacattaaagattccgacgtgggaagatattgctgtaaggctttcttcatgcaaggaatgtacacaagttgtgtagatttattagttctggcccctccggccattgtcattcctccaattaacacgaccatcatagaattcaatgaagtgctgtccttctgcaatgcctctggtgagccacgccctacgatcacctggcgcaggggagataaagaactggtgttccctccgggagaatacttcacacttcctaacgtttccagagatgataccggattgtacgaatgcatagcacagaacagtgttggacaagtgtcagcgcagtttaggataaacgtgctttaccaaccaacggcgcacgtcatcccggaaaatcttactgtcaatcaaagtgacatgataacacttacatgtctgacgtcaggaaatccctctcctaatgtcacgtggacagtggacggtaacacgtcagcgattctgtcagctgataataaacttgaaatgattgcaacaagcaaggcaaacgaagggagataccgctgtacagcttcaaatggaattggttttcccagcatctcaacagcatatgtatttgttaaacaccatcgtccgattaatacatcattcatttcctgttcatccgataacacggcctgggtaaatgatggtattgtattcacctgttcctcagtcagtagtccatctccagctacgtttgtgatatatcataacggcaagatcattaagaaaaataaatccggatatcataaaatatgcaacgtcaaactacaccatgccggtacctacacgtgtgaaccaagaaatacttttggtgtcggagagaggagaagtatgcgcttaactgtttatgaaaaggtcgctgttcacgtgatcccacgtgtagtgaacgtgacagaaggaagttctgttcttttaatatgtaaagccacaggaagcccaccacccaacatcacgtggacatccatgtccagcggagaaatctacaacggaggcaaacttgaaatgaaaagtgtccaaagaaatgacaccggcgattatgaatgttcagcaagtaatggaatgtcaaaccccgtcaaagatactgcgtttcttaatgtatattacgctcctacaatcaccaacactgccggaccaaacgttatagtcaacgagggcagcacactacaactctattgccatggcgacggaaaccctcagccaattataacttggaaattactgggcaccaatcaatctctgcatggagaagaggaacgacttatgatgcaaaatacacagaaatcacaagcaggagtttatctgtgcacggcaaataatttcttggggaacgattctaaaacaatagttgtggatgtttggtacaaacccttcaacaccagtttacagtcatctgtaaaatccagcatgatgaaatttaactcttcagtgacaattacatgcagaacaaactccatcccgccacctcatatttacactttctacaaagatggtgtcgttgtgcagaaagggaccgcagaatcttttaatattgctcaagttggctatcatgaccaaggttcctatgaatgcgttgcagagaatgcgcctgggcgtgactttagtgctgtgttaaatctcacggtgcaacgccctccgtttgtcattgatggaccacgcaatcaaacaatcaacgaaagtgatgcattgttgctgacttgtaatgttggtggcaatccaactccaaatatatcttggtttgatgacagtaataaagaattagcaacagggagtgttttgtttatcagtcacgccaacagaagtcacgctgggagttatcggtgtatcgcttctaatgggcttggtaatgctgttagttctcaagccacagtactcgtcaactataaaccaatagtactttccggtaagaaaaatatcagctcatggattggagatgagactcaaatccagtgccgcgcggagggcttccctctgccaaccattcactggtctgcgaaaggcgtggtgactactctcaaactctcaaagacaactgcacatagtacattaactgtaacaccaacgagccaatcagatttcaccatttactcctgttacgcacagaataaacttggatacgacagtgaaagctttatacttgaacaacttgtaacttctgatcctccagttataacgcatttggaattcggaagttccttcatccgagtgacttggaaagctcctgtaagcaatataggagaacctgtgactagctacatagttcaagcagtcgacgaaaagaacccaaataatgtgtttaactgttctgatgttacccacaatagttgcaccatatatggattagaacccgagacaacttacctcgtccgaatacaagccacaaacgtcgagggtcacagtttttcagcgcatgaaaaagttgtgacaaagtataaaggttattcaaagagcaaagaaagagaaacggaaaatgaaggaaataaaggaatttcaacaaccatgtttataagcgtgctagcagggattggtggagttattgtattcatagttgtggtttctttgttggtgaaacaccggaggtctactgggaaagcaacaatcactaaggaataa

Transcript

evm.model.Ap8.1474

ATGAAGCGTTTAATCCGGTGGCCTGTCTTCGCATGTATCCTTGTGGGTCTGCTTCCTATGTGCGCATGTTTCTCGTGGACACAGGAACCAAACAAACCCACACAAGCAAGTCCAGGTTCCACAAGTGTTCTCCAATGGAATTTTGAGCCTGCCGGCGACAGTTTCTGGTTTCTTTTGGTATCCAGGAACACTTCCACATCAAATAATTCAAGTGAAGAAGACATCGCATTAAAATTATCAAATGGAAGCACACATGTTTATGATGAGTTCAAGAGCCGAGCGGAGTTGATTAATCAGGCCACTCTGGTTTTACACGACATTAAAGATTCCGACGTGGGGAGATATTGCTGTAAGGCTTTCTTCATGCAAGGAATGTACACAAGTTGTGTGGATTTATTAGTTCTGGCAAGTTTTTCGTGGACACAGGAACCAAACAAACCCACACAAGCAAGTCCAGGTTCCACTAGTGTTCTCCAGTGGAATTTTGAGCCTGCCGGCGACAGTTTCTGGTTTCTTTTGGTATCCAGGAACACTTCCACCTCAAGTAATTCAAGCGAAGAAGATATCGCATTAAAACTATCAAATGGAAGCACACATGTTTATGATGAGTTCAAGAGCCGAGCGGAGTTGATTAACCAGGCCACCCTTGTTTTACACGACATTAAAGATTCCGACGTGGGAAGATATTGCTGTAAGGCTTTCTTCATGCAAGGAATGTACACAAGTTGTGTAGATTTATTAGTTCTGGCCCCTCCGGCCATTGTCATTCCTCCAATTAACACGACCATCATAGAATTCAATGAAGTGCTGTCCTTCTGCAATGCCTCTGGTGAGCCACGCCCTACGATCACCTGGCGCAGGGGAGATAAAGAACTGGTGTTCCCTCCGGGAGAATACTTCACACTTCCTAACGTTTCCAGAGATGATACCGGATTGTACGAATGCATAGCACAGAACAGTGTTGGACAAGTGTCAGCGCAGTTTAGGATAAACGTGCTTTACCAACCAACGGCGCACGTCATCCCGGAAAATCTTACTGTCAATCAAAGTGACATGATAACACTTACATGTCTGACGTCAGGAAATCCCTCTCCTAATGTCACGTGGACAGTGGACGGTAACACGTCAGCGATTCTGTCAGCTGATAATAAACTTGAAATGATTGCAACAAGCAAGGCAAACGAAGGGAGATACCGCTGTACAGCTTCAAATGGAATTGGTTTTCCCAGCATCTCAACAGCATATGTATTTGTTAAACACCATCGTCCGATTAATACATCATTCATTTCCTGTTCATCCGATAACACGGCCTGGGTAAATGATGGTATTGTATTCACCTGTTCCTCAGTCAGTAGTCCATCTCCAGCTACGTTTGTGATATATCATAACGGCAAGATCATTAAGAAAAATAAATCCGGATATCATAAAATATGCAACGTCAAACTACACCATGCCGGTACCTACACGTGTGAACCAAGAAATACTTTTGGTGTCGGAGAGAGGAGAAGTATGCGCTTAACTGTTTATGAAAAGGTCGCTGTTCACGTGATCCCACGTGTAGTGAACGTGACAGAAGGAAGTTCTGTTCTTTTAATATGTAAAGCCACAGGAAGCCCACCACCCAACATCACGTGGACATCCATGTCCAGCGGAGAAATCTACAACGGAGGCAAACTTGAAATGAAAAGTGTCCAAAGAAATGACACCGGCGATTATGAATGTTCAGCAAGTAATGGAATGTCAAACCCCGTCAAAGATACTGCGTTTCTTAATGTATATTACGCTCCTACAATCACCAACACTGCCGGACCAAACGTTATAGTCAACGAGGGCAGCACACTACAACTCTATTGCCATGGCGACGGAAACCCTCAGCCAATTATAACTTGGAAATTACTGGGCACCAATCAATCTCTGCATGGAGAAGAGGAACGACTTATGATGCAAAATACACAGAAATCACAAGCAGGAGTTTATCTGTGCACGGCAAATAATTTCTTGGGGAACGATTCTAAAACAATAGTTGTGGATGTTTGGTACAAACCCTTCAACACCAGTTTACAGTCATCTGTAAAATCCAGCATGATGAAATTTAACTCTTCAGTGACAATTACATGCAGAACAAACTCCATCCCGCCACCTCATATTTACACTTTCTACAAAGATGGTGTCGTTGTGCAGAAAGGGACCGCAGAATCTTTTAATATTGCTCAAGTTGGCTATCATGACCAAGGTTCCTATGAATGCGTTGCAGAGAATGCGCCTGGGCGTGACTTTAGTGCTGTGTTAAATCTCACGGTGCAACGCCCTCCGTTTGTCATTGATGGACCACGCAATCAAACAATCAACGAAAGTGATGCATTGTTGCTGACTTGTAATGTTGGTGGCAATCCAACTCCAAATATATCTTGGTTTGATGACAGTAATAAAGAATTAGCAACAGGGAGTGTTTTGTTTATCAGTCACGCCAACAGAAGTCACGCTGGGAGTTATCGGTGTATCGCTTCTAATGGGCTTGGTAATGCTGTTAGTTCTCAAGCCACAGTACTCGTCAACTATAAACCAATAGTACTTTCCGGTAAGAAAAATATCAGCTCATGGATTGGAGATGAGACTCAAATCCAGTGCCGCGCGGAGGGCTTCCCTCTGCCAACCATTCACTGGTCTGCGAAAGGCGTGGTGACTACTCTCAAACTCTCAAAGACAACTGCACATAGTACATTAACTGTAACACCAACGAGCCAATCAGATTTCACCATTTACTCCTGTTACGCACAGAATAAACTTGGATACGACAGTGAAAGCTTTATACTTGAACAACTTGTAACTTCTGATCCTCCAGTTATAACGCATTTGGAATTCGGAAGTTCCTTCATCCGAGTGACTTGGAAAGCTCCTGTAAGCAATATAGGAGAACCTGTGACTAGCTACATAGTTCAAGCAGTCGACGAAAAGAACCCAAATAATGTGTTTAACTGTTCTGATGTTACCCACAATAGTTGCACCATATATGGATTAGAACCCGAGACAACTTACCTCGTCCGAATACAAGCCACAAACGTCGAGGGTCACAGTTTTTCAGCGCATGAAAAAGTTGTGACAAAGTATAAAGGTTATTCAAAGAGCAAAGAAAGAGAAACGGAAAATGAAGGAAATAAAGGAATTTCAACAACCATGTTTATAAGCGTGCTAGCAGGGATTGGTGGAGTTATTGTATTCATAGTTGTGGTTTCTTTGTTGGTGAAACACCGGAGGTCTACTGGGAAAGCAACAATCACTAAGGAATAA

Protein

Uniprot

Uniprot term	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8NDA2	Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46958	B-CELL RECEPTOR CD22	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0019903	Molecular Function	protein phosphatase binding	Interproscan
GO:0030888	Biological Process	regulation of B cell proliferation	Interproscan
GO:0033691	Molecular Function	sialic acid binding	Interproscan
GO:0042113	Biological Process	B cell activation	Interproscan
GO:0042609	Molecular Function	CD4 receptor binding	Interproscan
GO:0050859	Biological Process	negative regulation of B cell receptor signaling pathway	Interproscan
GO:0055037	Cellular Component	recycling endosome	Interproscan
GO:0070062	Cellular Component	extracellular exosome	Interproscan