Gene detail

Detailed information of evm.model.Ap8.1556 in Astrangia poculata

Genomic Location: Ap8:17349872...17352316
NR annotation: XP_034266860.1, uncharacterized protein LOC117661806 [Pantherophis guttatus]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap8.1556

atgacggcaaaagactgggtaaacttcaaaaatgcaaccaattgccacatttgcgaagaaacgctaatgaaacaaaactttttggactctttgccagtttggattggaaacaaaaaggagcttaattactttgggcagatgcacaaaaaatgttattacagaaaggaaaaagaggtaaaaaacctggataccgaaacccactataagctaaaaaagcttgaaaaagaaacacacaaattagcagcgaaaaaccaaaaaaactgcttagcgtgccacaagccgcttatccagccgaactacaaggatgtggtaaaagaccattgccacataacaggcaagtttcgaggagccgcacacaacatttgtaactttatgatgcgaatagatccgaaaaaggttcaaataccagttgcatttcacaacctgaggggttatgatgcacaccatttaatgcaggcaatgtcaaagatttcaaaagaggcacagaaagaggtaaaatgtgtcgcaaacaacatggaaaaatacatcacattttcactggggggtttaaggtttattgacagcttgaactttttacctgggaagcttgaaaaacttgtagaagagataccaaaggagtcattaaatataacaaaggataacttagaatttgaagaaagcgaagaatgttttgaacttctttgcaaaaagggaatctatccttacgaatacatggactcatggggaagatttaaagaaacaagtttgccagaaaaagaaaagttttacagcaaacttaacgacgagcacataacagataaagagtatgaacatgcgcaaaaagtgtggaaaacctttggctgccagaccctgggcgactaccacgatttgtacgttaagacagacgtgaccctgttagccgacgtttttgaaaacttccgaaaaatttgtcttgagaagtacgggttggatcccgcgaattattacacgacgccaggcctttcttgggacgcactcttgaaaaagacaggcgtggagcttgagttacttacagactatgaaatgcatctttttgtcgaaaggggaataagaggcggaatttcgatggtaagcaagagatatgcaaaggcgaacaacccttatgttgagggatttgacccgagccagccaaaaatatacataacgtacctcgatgcgaataacctttacgggtgggcaatgagcaagccgctcccaaaaagtggtttcagatggaaaaaggttatgccaacagaaaaagaaataacgacaaaaaaagagtatgcaaaagctggatggattttagaggtggacttggaatacccgaaagagctgcatgacgcccacaacagctatccattagcaccagagaaaaagaaaataaacaaagaaatgttttcgccttaccaaaacaaaacaataaaaaatcttgatttgcacccgccagacaccgaaaagcttgtttcaactcttgaagacaaaaccaattacgtcgtgcattaccgaaacttgcagttttatctaaaacagggaatgaaactcaaaaaagtgcacagggtcttagagtttgaacaagaggcgtggatggagccgtacatccggatgaacacagaattccgaaaagaagcgaaaagcgtctttgaaaagaacttttacaagctaatgaataactcagtttttggaaaaacaatggaaaacttgagaaaccgtgtagacataagaatagtgcgcagcgacgaaaaaaagaaaataagaaaattagttgcaagcccattgtattcaaggcatgtgatgttttcaaacgatctggttggaatagacatgcgaaaaagtaagctttttcttaataaaccggtctacacaggcatgaccatccttgacgtaagcaagctatgcatgtatgacttcttttacaaccatctaaaagaaaactatggagagcgttgcgagcttttgtatacagacacagacagccttttgcttgagatagaaacagaagacgtttacgcggacatggcaaaaaacattgacaagtacgacacaagcgactacccaaaagagcattcacttcattcaaacgaaaacaaaaaggtgttgggaaaaatgaaagacgaatgcgcaggaaaactaatttcagagtgtgtttgtttgaggccaaaaatgtattcaataatgacagaagacaaaaaaaatataaaaaaagcaaagggggtaaaagagtgtgtgacaaagaataagatagatcatgaaaacttcaaagatacactttttcaaaacaaggaaagctttcacgaaatgcacatgctaagaagctattcccaagagatgtattcaatagtggtaaacaaaaaatcgctgtcgccttttgactcaaagcgatggatagcggatgatgggatacatacaaatgcttacgggtataagttttgcgaaacaaagccgacataa

Transcript

evm.model.Ap8.1556

ATGACGGCAAAAGACTGGGTAAACTTCAAAAATGCAACCAATTGCCACATTTGCGAAGAAACGCTAATGAAACAAAACTTTTTGGACTCTTTGCCAGTTTGGATTGGAAACAAAAAGGAGCTTAATTACTTTGGGCAGATGCACAAAAAATGTTATTACAGAAAGGAAAAAGAGGTAAAAAACCTGGATACCGAAACCCACTATAAGCTAAAAAAGCTTGAAAAAGAAACACACAAATTAGCAGCGAAAAACCAAAAAAACTGCTTAGCGTGCCACAAGCCGCTTATCCAGCCGAACTACAAGGATGTGGTAAAAGACCATTGCCACATAACAGGCAAGTTTCGAGGAGCCGCACACAACATTTGTAACTTTATGATGCGAATAGATCCGAAAAAGGTTCAAATACCAGTTGCATTTCACAACCTGAGGGGTTATGATGCACACCATTTAATGCAGGCAATGTCAAAGATTTCAAAAGAGGCACAGAAAGAGGTAAAATGTGTCGCAAACAACATGGAAAAATACATCACATTTTCACTGGGGGGTTTAAGGTTTATTGACAGCTTGAACTTTTTACCTGGGAAGCTTGAAAAACTTGTAGAAGAGATACCAAAGGAGTCATTAAATATAACAAAGGATAACTTAGAATTTGAAGAAAGCGAAGAATGTTTTGAACTTCTTTGCAAAAAGGGAATCTATCCTTACGAATACATGGACTCATGGGGAAGATTTAAAGAAACAAGTTTGCCAGAAAAAGAAAAGTTTTACAGCAAACTTAACGACGAGCACATAACAGATAAAGAGTATGAACATGCGCAAAAAGTGTGGAAAACCTTTGGCTGCCAGACCCTGGGCGACTACCACGATTTGTACGTTAAGACAGACGTGACCCTGTTAGCCGACGTTTTTGAAAACTTCCGAAAAATTTGTCTTGAGAAGTACGGGTTGGATCCCGCGAATTATTACACGACGCCAGGCCTTTCTTGGGACGCACTCTTGAAAAAGACAGGCGTGGAGCTTGAGTTACTTACAGACTATGAAATGCATCTTTTTGTCGAAAGGGGAATAAGAGGCGGAATTTCGATGGTAAGCAAGAGATATGCAAAGGCGAACAACCCTTATGTTGAGGGATTTGACCCGAGCCAGCCAAAAATATACATAACGTACCTCGATGCGAATAACCTTTACGGGTGGGCAATGAGCAAGCCGCTCCCAAAAAGTGGTTTCAGATGGAAAAAGGTTATGCCAACAGAAAAAGAAATAACGACAAAAAAAGAGTATGCAAAAGCTGGATGGATTTTAGAGGTGGACTTGGAATACCCGAAAGAGCTGCATGACGCCCACAACAGCTATCCATTAGCACCAGAGAAAAAGAAAATAAACAAAGAAATGTTTTCGCCTTACCAAAACAAAACAATAAAAAATCTTGATTTGCACCCGCCAGACACCGAAAAGCTTGTTTCAACTCTTGAAGACAAAACCAATTACGTCGTGCATTACCGAAACTTGCAGTTTTATCTAAAACAGGGAATGAAACTCAAAAAAGTGCACAGGGTCTTAGAGTTTGAACAAGAGGCGTGGATGGAGCCGTACATCCGGATGAACACAGAATTCCGAAAAGAAGCGAAAAGCGTCTTTGAAAAGAACTTTTACAAGCTAATGAATAACTCAGTTTTTGGAAAAACAATGGAAAACTTGAGAAACCGTGTAGACATAAGAATAGTGCGCAGCGACGAAAAAAAGAAAATAAGAAAATTAGTTGCAAGCCCATTGTATTCAAGGCATGTGATGTTTTCAAACGATCTGGTTGGAATAGACATGCGAAAAAGTAAGCTTTTTCTTAATAAACCGGTCTACACAGGCATGACCATCCTTGACGTAAGCAAGCTATGCATGTATGACTTCTTTTACAACCATCTAAAAGAAAACTATGGAGAGCGTTGCGAGCTTTTGTATACAGACACAGACAGCCTTTTGCTTGAGATAGAAACAGAAGACGTTTACGCGGACATGGCAAAAAACATTGACAAGTACGACACAAGCGACTACCCAAAAGAGCATTCACTTCATTCAAACGAAAACAAAAAGGTGTTGGGAAAAATGAAAGACGAATGCGCAGGAAAACTAATTTCAGAGTGTGTTTGTTTGAGGCCAAAAATGTATTCAATAATGACAGAAGACAAAAAAAATATAAAAAAAGCAAAGGGGGTAAAAGAGTGTGTGACAAAGAATAAGATAGATCATGAAAACTTCAAAGATACACTTTTTCAAAACAAGGAAAGCTTTCACGAAATGCACATGCTAAGAAGCTATTCCCAAGAGATGTATTCAATAGTGGTAAACAAAAAATCGCTGTCGCCTTTTGACTCAAAGCGATGGATAGCGGATGATGGGATACATACAAATGCTTACGGGTATAAGTTTTGCGAAACAAAGCCGACATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02945	Endonuclease_7	Recombination endonuclease VII	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR038563	Homologous_superfamily	Recombination endonuclease VII superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR004211	Family	Recombination endonuclease VII	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31511	PROTEIN CBG23764	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22544	SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1	EC:3.1.5.-	DNA repair and recombination proteins	ko03400	deepkoala