Gene detail

Detailed information of evm.model.Ap9.2097 in Astrangia poculata

Genomic Location: Ap9:22747164...22751194
NR annotation: XP_044171652.1, uncharacterized protein LOC122955991 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap9.2097

atggatgataacgaggataacgagagaaacctcatcaaaacattcgactgtcacggcgaccaaaacacgcttggtttacgatggaaacgctggctcatagcgttcgaactgtttgcagacggcaaaggcttaatcataaatgaagagaacacaaacaacaggcagagaagacgtgcattgttactccatctagccggaactgacgttcaagacattttctacacgcttccaaacataggagatgcgaaggattataagaaagccgtgcatgcactgaacgcatacttcgttccaaaagtcgacacaacatacgctagacactgcttcagacagcttacacaagcacctggggagacaattcgtcaatttgcaacaagactcaggcgggcagcgaaggattgtgactacggagcagacacggataatcaaattcgcgatgaaattctttgcaagtgcaccagcacgtacatcaagcgaaaactcctggaagaaggtcaaggtcttactctggctaaagcactcgaaatagctgaaaactgtgaaaaagtcaacacacagcttgccgcaatgactccggaaggacaacgactggaagaaaaagaagaggactcagcaagtgtaaaccgcattgaggggaaaacgagaggtcctggaaacaagaatcagtcaccttcacaagtcacctgctaccgatgtggcagagccgggcatatcagcagagacacaaagtgtccagcaagaggtcataaatgtcataaatgcgggttcgaaggacattttcaagagtgttgcaagacgaagcataaacgtgaaacaagaccaaagaacaccaagcgccacagggacaccaaagcaggctccgcaaacatggtagatacccaagatgacgaagatgacccggaatatgcatttgcagtaggcgatagaaagcaagagaaaattgaagtcaccgtcggaggatgtaagttaaacgtgatcgtagattctggagcaagcaccaacatcatcgacaaacaaacatgggagtggctgaagaggaacaaagtgaaatgcaaatcaacccgctcagacaaaaagctctatgcgtatgcatcccaaacacccttgaacgtaatagaaacattctcttacgagatctccacgggaagaaacactgccattgccgagttctgtgtaatcgacggcaagggagatcctctcctagggagagagactgcaacgagccttggtgtattgaagatagggatagacatcgctgcgataaacacaggccgacaagatatcggtgaggccctgcaagataaataccaagaagtcttcagtggtgttggaaaattaaaaggccgagcagtgcaactccacatagacccaaatgtgaagccggtggcgcagccaatacggaggatccctttcagcctgagatcaaaggtgaaagagaagatccaagagatcatcagcttggatatcatagagccggcagacgggcctaccccatgggttaatccagtagttgtggttcctaaatctggaggagacattcgcctctgcatagacatgcgtagggcgaacaaggcaatactgaaagagcgtcaccctatcccaacagttgacgagataatgcaaagtttgaatgcctctgaacaataccaacacgagatccagacagcactcgctggaatagaggggcaagagaacatctcagatgacattattgtacatggtaaagaccaagcagaacatgacgcacgcctagagatggtgatcaagaggctcggagagcgtggattgactcttaatgcagcaaagtgccagttcagcatggacacgctaacattcgtcggaatgaatggcgagacaccaagtgtgcaggaagagacagtgaccacaacaaatcacaaagagcaggaacctgtccaacaacagagtgtggcacaggaaccaatcgcggccgaaaccgaagttccacctagggatcatgcagctgctgtacccgaagtttcactcaggaggtcgcagagacaaaccactgcgccaagttatctcaaggattactatacctga

Transcript

evm.model.Ap9.2097

ATGGATGATAACGAGGATAACGAGAGAAACCTCATCAAAACATTCGACTGTCACGGCGACCAAAACACGCTTGGTTTACGATGGAAACGCTGGCTCATAGCGTTCGAACTGTTTGCAGACGGCAAAGGCTTAATCATAAATGAAGAGAACACAAACAACAGGCAGAGAAGACGTGCATTGTTACTCCATCTAGCCGGAACTGACGTTCAAGACATTTTCTACACGCTTCCAAACATAGGAGATGCGAAGGATTATAAGAAAGCCGTGCATGCACTGAACGCATACTTCGTTCCAAAAGTCGACACAACATACGCTAGACACTGCTTCAGACAGCTTACACAAGCACCTGGGGAGACAATTCGTCAATTTGCAACAAGACTCAGGCGGGCAGCGAAGGATTGTGACTACGGAGCAGACACGGATAATCAAATTCGCGATGAAATTCTTTGCAAGTGCACCAGCACGTACATCAAGCGAAAACTCCTGGAAGAAGGTCAAGGTCTTACTCTGGCTAAAGCACTCGAAATAGCTGAAAACTGTGAAAAAGTCAACACACAGCTTGCCGCAATGACTCCGGAAGGACAACGACTGGAAGAAAAAGAAGAGGACTCAGCAAGTGTAAACCGCATTGAGGGGAAAACGAGAGGTCCTGGAAACAAGAATCAGTCACCTTCACAAGTCACCTGCTACCGATGTGGCAGAGCCGGGCATATCAGCAGAGACACAAAGTGTCCAGCAAGAGGTCATAAATGTCATAAATGCGGGTTCGAAGGACATTTTCAAGAGTGTTGCAAGACGAAGCATAAACGTGAAACAAGACCAAAGAACACCAAGCGCCACAGGGACACCAAAGCAGGCTCCGCAAACATGGTAGATACCCAAGATGACGAAGATGACCCGGAATATGCATTTGCAGTAGGCGATAGAAAGCAAGAGAAAATTGAAGTCACCGTCGGAGGATGTAAGTTAAACGTGATCGTAGATTCTGGAGCAAGCACCAACATCATCGACAAACAAACATGGGAGTGGCTGAAGAGGAACAAAGTGAAATGCAAATCAACCCGCTCAGACAAAAAGCTCTATGCGTATGCATCCCAAACACCCTTGAACGTAATAGAAACATTCTCTTACGAGATCTCCACGGGAAGAAACACTGCCATTGCCGAGTTCTGTGTAATCGACGGCAAGGGAGATCCTCTCCTAGGGAGAGAGACTGCAACGAGCCTTGGTGTATTGAAGATAGGGATAGACATCGCTGCGATAAACACAGGCCGACAAGATATCGGTGAGGCCCTGCAAGATAAATACCAAGAAGTCTTCAGTGGTGTTGGAAAATTAAAAGGCCGAGCAGTGCAACTCCACATAGACCCAAATGTGAAGCCGGTGGCGCAGCCAATACGGAGGATCCCTTTCAGCCTGAGATCAAAGGTGAAAGAGAAGATCCAAGAGATCATCAGCTTGGATATCATAGAGCCGGCAGACGGGCCTACCCCATGGGTTAATCCAGTAGTTGTGGTTCCTAAATCTGGAGGAGACATTCGCCTCTGCATAGACATGCGTAGGGCGAACAAGGCAATACTGAAAGAGCGTCACCCTATCCCAACAGTTGACGAGATAATGCAAAGTTTGAATGCCTCTGAACAATACCAACACGAGATCCAGACAGCACTCGCTGGAATAGAGGGGCAAGAGAACATCTCAGATGACATTATTGTACATGGTAAAGACCAAGCAGAACATGACGCACGCCTAGAGATGGTGATCAAGAGGCTCGGAGAGCGTGGATTGACTCTTAATGCAGCAAAGTGCCAGTTCAGCATGGACACGCTAACATTCGTCGGAATGAATGGCGAGACACCAAGTGTGCAGGAAGAGACAGTGACCACAACAAATCACAAAGAGCAGGAACCTGTCCAACAACAGAGTGTGGCACAGGAACCAATCGCGGCCGAAACCGAAGTTCCACCTAGGGATCATGCAGCTGCTGTACCCGAAGTTTCACTCAGGAGGTCGCAGAGACAAACCACTGCGCCAAGTTATCTCAAGGATTACTATACCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan