Detailed information of evm.model.Ap9.2113 in Astrangia poculata

Genomic Location: Ap9:22991980...22999495
NR annotation: CAH3143824.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q62845Contactin-4 OS=Rattus norvegicus OX=10116 GN=Cntn4 PE=1 SV=1
Q69Z26Contactin-4 OS=Mus musculus OX=10090 GN=Cntn4 PE=1 SV=2
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

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