Gene detail

Detailed information of evm.model.Ap9.285 in Astrangia poculata

Genomic Location: Ap9:3011108...3022834
NR annotation: XP_020606232.1, hemicentin-2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

evm.model.Ap9.285

atgttaaagtcccaatcacctgagctgcaggtgggtggcactgtttcctcgctttgcaattttcttcgtatcctaccagaagacgaagaagaaaaagaagccagaaggacgttcaagtttcaaactctttctcgcctttccgacaacccttgcaacagtgacccatgccttaatcatgccacatgtttgaacggattcacagagaagagatacgtttgcctttgccaaactggttataaaggagaacactgcgaaacggaaatagacgcgtgtactatgaagggtcacaaatgtgatgtcaatgccctatgcatcagagacgaggaaacgcataaatgcgtttgcaaagatggatttcacggcaatggggtaacctgcacggatatagacgaatgtaccactaacacctacagctgtcatgtgaaagcttggtgcagtaataccgaagggtcctacaaatgtacatgcaaagacggatatggtgaaaaaggaggcctctgcatcgatatagacgagtgtgcattgaaaaaggacaactgcagcacccatgcaatgtgcaacaacacagagggatctttcaactgtacttgtaaggatggatatgttggcgacgggatcagctgcgctgatatagacgagtgttcgttgaagaaggacaactgcagcacccatgcaatgtgcaacaacaaagagggatctttcaactgcacttgcaaggaaggatatgttggagacggggtcagctgcgccgatacagacgagtgtgcattgaaaaccgacaactgcagcacacatgcagcctgcaacaacacagagggatcgttcaactgcacttgtaagcctggatatgttggagacgggatcagctgcgctgataaagacgagtgtgcattgaaaaccgacaactgcagcacacatgcagcctgcaacaacacagagggatcgttcaactgcacttgcaaggatggatatgttggagacgggatcagctgcgctgatatagacgagtgcgcgcttaagaagaacaactgtagcacccatgccatctgcaacaacacggaaggatctttcaactgcacttgtaagcctggatatgttggagacgggatcagctgcgctgatattgacgagtgtgcattgaagatagacaactgctgcacccatgcaatgtgcaacaacacagagggatcgttcaactgcacttgcaagaatggattttatggaaatggaaacaattgcactgatatcgacgagtgtgccatcagagctcataactgtagtttaaatgctacctgcaaaaataccaaaggatcattcatctgtacttgtaagcctggatttggcggcgacgggatcagctgcgctgcgttcaaggctgtgttcaacaatctcggtgcgagtggaagatatggtccaacatcacttagtagtcactatacaggtcaggatcatgagggtcaagtgactctgtctagtggtattcaacagtggactgtgccgtacactggtgactatcaaatagaagcgatagaagcagcagggggttacgatacatggcagaacagtatccagtaccgaggaaggggagcaagaatgattggaacttttagtttgtccaaaggcgaaatcattcaaatacttgttggtcaagaaggaggaatcaacatactcacgtatagttctggaggcggtggaggtacatttgtagtgagaggaagcaaaacacctttgataatagctggaggtggaggtggcatattttttgcacagtcaagacatgcaggatgtgatgccagcacgagcacaacagggaatcctgggtaccagtcatggacagggggtagaaatggacatggttcacaggttgctgatggtggggtgtcaggtaacgatatactactcactccagactgtagaactaattctttagatgactgtgctaacggcactttaaaaagcaaggggacttcaggtggtggcggtggcggtttttactccagcggaagaagtgcaactaattttggtggcaccataggattaggcggagaaggtggaaaaggatttcttcagggaggagtgggtggaagagcccagcataacaatgttgacggaggatttggcggtggtggtggtgctcatggattcggagcaggcggtggcggcggaggatactcaggtggaagcagtggagatgatgaatatgactcctgtggaggaggaggaggttcctataataacggaacaaagcaaaagcacgactgttgttataacacagctggccatggaaatgtgaccgttacattactgtag

Transcript

evm.model.Ap9.285

ATGTTAAAGTCCCAATCACCTGAGCTGCAGGTGGGTGGCACTGTTTCCTCGCTTTGCAATTTTCTTCGTATCCTACCAGAAGACGAAGAAGAAAAAGAAGCCAGAAGGACGTTCAAGTTTCAAACTCTTTCTCGCCTTTCCGACAACCCTTGCAACAGTGACCCATGCCTTAATCATGCCACATGTTTGAACGGATTCACAGAGAAGAGATACGTTTGCCTTTGCCAAACTGGTTATAAAGGAGAACACTGCGAAACGGAAATAGACGCGTGTACTATGAAGGGTCACAAATGTGATGTCAATGCCCTATGCATCAGAGACGAGGAAACGCATAAATGCGTTTGCAAAGATGGATTTCACGGCAATGGGGTAACCTGCACGGATATAGACGAATGTACCACTAACACCTACAGCTGTCATGTGAAAGCTTGGTGCAGTAATACCGAAGGGTCCTACAAATGTACATGCAAAGACGGATATGGTGAAAAAGGAGGCCTCTGCATCGATATAGACGAGTGTGCATTGAAAAAGGACAACTGCAGCACCCATGCAATGTGCAACAACACAGAGGGATCTTTCAACTGTACTTGTAAGGATGGATATGTTGGCGACGGGATCAGCTGCGCTGATATAGACGAGTGTTCGTTGAAGAAGGACAACTGCAGCACCCATGCAATGTGCAACAACAAAGAGGGATCTTTCAACTGCACTTGCAAGGAAGGATATGTTGGAGACGGGGTCAGCTGCGCCGATACAGACGAGTGTGCATTGAAAACCGACAACTGCAGCACACATGCAGCCTGCAACAACACAGAGGGATCGTTCAACTGCACTTGTAAGCCTGGATATGTTGGAGACGGGATCAGCTGCGCTGATAAAGACGAGTGTGCATTGAAAACCGACAACTGCAGCACACATGCAGCCTGCAACAACACAGAGGGATCGTTCAACTGCACTTGCAAGGATGGATATGTTGGAGACGGGATCAGCTGCGCTGATATAGACGAGTGCGCGCTTAAGAAGAACAACTGTAGCACCCATGCCATCTGCAACAACACGGAAGGATCTTTCAACTGCACTTGTAAGCCTGGATATGTTGGAGACGGGATCAGCTGCGCTGATATTGACGAGTGTGCATTGAAGATAGACAACTGCTGCACCCATGCAATGTGCAACAACACAGAGGGATCGTTCAACTGCACTTGCAAGAATGGATTTTATGGAAATGGAAACAATTGCACTGATATCGACGAGTGTGCCATCAGAGCTCATAACTGTAGTTTAAATGCTACCTGCAAAAATACCAAAGGATCATTCATCTGTACTTGTAAGCCTGGATTTGGCGGCGACGGGATCAGCTGCGCTGCGTTCAAGGCTGTGTTCAACAATCTCGGTGCGAGTGGAAGATATGGTCCAACATCACTTAGTAGTCACTATACAGGTCAGGATCATGAGGGTCAAGTGACTCTGTCTAGTGGTATTCAACAGTGGACTGTGCCGTACACTGGTGACTATCAAATAGAAGCGATAGAAGCAGCAGGGGGTTACGATACATGGCAGAACAGTATCCAGTACCGAGGAAGGGGAGCAAGAATGATTGGAACTTTTAGTTTGTCCAAAGGCGAAATCATTCAAATACTTGTTGGTCAAGAAGGAGGAATCAACATACTCACGTATAGTTCTGGAGGCGGTGGAGGTACATTTGTAGTGAGAGGAAGCAAAACACCTTTGATAATAGCTGGAGGTGGAGGTGGCATATTTTTTGCACAGTCAAGACATGCAGGATGTGATGCCAGCACGAGCACAACAGGGAATCCTGGGTACCAGTCATGGACAGGGGGTAGAAATGGACATGGTTCACAGGTTGCTGATGGTGGGGTGTCAGGTAACGATATACTACTCACTCCAGACTGTAGAACTAATTCTTTAGATGACTGTGCTAACGGCACTTTAAAAAGCAAGGGGACTTCAGGTGGTGGCGGTGGCGGTTTTTACTCCAGCGGAAGAAGTGCAACTAATTTTGGTGGCACCATAGGATTAGGCGGAGAAGGTGGAAAAGGATTTCTTCAGGGAGGAGTGGGTGGAAGAGCCCAGCATAACAATGTTGACGGAGGATTTGGCGGTGGTGGTGGTGCTCATGGATTCGGAGCAGGCGGTGGCGGCGGAGGATACTCAGGTGGAAGCAGTGGAGATGATGAATATGACTCCTGTGGAGGAGGAGGAGGTTCCTATAATAACGGAACAAAGCAAAAGCACGACTGTTGTTATAACACAGCTGGCCATGGAAATGTGACCGTTACATTACTGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan