Detailed information of evm.model.Chr01.2080 in Hemicorallium imperiale

Genomic Location: Chr01:51934263...52016618
NR annotation: XP_028400269.1, la-related protein 1B-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.2080 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6ZQ58La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3
Q659C4La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2
Q6PKG0La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005211 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21071
all species →		LARP1_HEATLARP1 HEAT repeat regionRepeatInterproscan
PF05383
all species →		LaLa domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR006630
all species →		DomainLa-type HTH domainInterproscan
IPR006607
all species →		RepeatLARP1-like, DM15 repeatInterproscan
IPR045180
all species →		FamilyLa domain containing proteinInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792
all species →		LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000339
all species →		Molecular FunctionRNA cap bindingInterproscan
GO:0048255
all species →		Biological ProcessmRNA stabilizationInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0010494
all species →		Cellular Componentcytoplasmic stress granuleInterproscan
GO:0045727
all species →		Biological Processpositive regulation of translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr01.2080.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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