Gene detail

Detailed information of evm.model.Chr01.22 in Hemicorallium imperiale

Genomic Location: Chr01:144215...145594
NR annotation: CAA0100436.1, GTPase Der [BD1-7 clade bacterium]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr01.22 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3PDM5	GTPase Der OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=der PE=3 SV=1
C5BLV6	GTPase Der OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=der PE=3 SV=1
Q21KS9	GTPase Der OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=der PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012271 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14714 all species →	KH_dom-like	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal	Domain	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031166 all species →	Domain	EngA-type guanine nucleotide-binding (G) domain	Interproscan
IPR016484 all species →	Family	GTPase Der	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR032859 all species →	Domain	GTPase Der, C-terminal KH-domain-like	Interproscan
IPR015946 all species →	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43834 all species →	GTPASE DER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03977	engA, der; GTPase	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.