Detailed information of evm.model.Chr01.2809 in Hemicorallium imperiale

Genomic Location: Chr01:62763189...62832213
NR annotation: XP_028416649.1, cullin-4A-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.2809 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2A432Cullin-4B OS=Mus musculus OX=10090 GN=Cul4b PE=1 SV=1
Q13620Cullin-4B OS=Homo sapiens OX=9606 GN=CUL4B PE=1 SV=4
Q3TCH7Cullin-4A OS=Mus musculus OX=10090 GN=Cul4a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000554 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|Cullin · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10557
all species →		Cullin_Nedd8Cullin protein neddylation domainDomainInterproscan
PF00888
all species →		CullinCullin familyRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR019559
all species →		DomainCullin protein, neddylation domainInterproscan
IPR016158
all species →		DomainCullin homology domainInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR016157
all species →		Conserved_siteCullin, conserved siteInterproscan
IPR036317
all species →		Homologous_superfamilyCullin homology domain superfamilyInterproscan
IPR045093
all species →		FamilyCullinInterproscan
IPR016159
all species →		Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan
IPR001373
all species →		DomainCullin, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11932
all species →		CULLINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031461
all species →		Cellular Componentcullin-RING ubiquitin ligase complexInterproscan
GO:0031625
all species →		Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0006974
all species →		Biological ProcessDNA damage responseInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0080008
all species →		Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10609CUL4; cullin 4-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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