Detailed information of evm.model.Chr01.301 in Hemicorallium imperiale

Genomic Location: Chr01:7447566...7472759
NR annotation: CAB4001777.1, Shroom2-like isoform X2 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.301 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q09JY9Protein Shroom2 OS=Xenopus tropicalis OX=8364 GN=shroom2 PE=2 SV=1
Q27IV2Protein Shroom3 OS=Xenopus laevis OX=8355 GN=shroom3 PE=2 SV=1
Q7TP36Protein Shroom2 OS=Rattus norvegicus OX=10116 GN=Shroom2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002924 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08687
all species →		ASD2Apx/Shroom domain ASD2FamilyInterproscan
PF00595
all species →		PDZPDZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027685
all species →		FamilyShroom familyInterproscan
IPR001478
all species →		DomainPDZ domainInterproscan
IPR036034
all species →		Homologous_superfamilyPDZ superfamilyInterproscan
IPR014799
all species →		DomainApx/Shrm Domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15012
all species →		APICAL PROTEIN/SHROOM-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005912
all species →		Cellular Componentadherens junctionInterproscan
GO:0007015
all species →		Biological Processactin filament organizationInterproscan
GO:0016324
all species →		Cellular Componentapical plasma membraneInterproscan
GO:0030864
all species →		Cellular Componentcortical actin cytoskeletonInterproscan
GO:0043296
all species →		Cellular Componentapical junction complexInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr01.301.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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