Gene detail

Detailed information of evm.model.Chr01.3057 in Hemicorallium imperiale

Genomic Location: Chr01:68240448...68281851
NR annotation: XP_028409322.1, rRNA 2'-O-methyltransferase fibrillarin-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr01.3057 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W1V3	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1
Q8I1F4	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1
P22232	rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis OX=8355 GN=fbl PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007026 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01269 all species →	Fibrillarin	Fibrillarin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000692 all species →	Family	rRNA 2'-O-methyltransferase fibrillarin-like	Interproscan
IPR020813 all species →	Conserved_site	Fibrillarin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10335 all species →	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0000494 all species →	Biological Process	box C/D sno(s)RNA 3'-end processing	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008649 all species →	Molecular Function	rRNA methyltransferase activity	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:1990259 all species →	Molecular Function	histone H2AQ104 methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14563	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.