Gene detail

Detailed information of evm.model.Chr01.33 in Hemicorallium imperiale

Genomic Location: Chr01:158178...158561
NR annotation: PLY13135.1, MAG: Fe-S cluster assembly scaffold IscU [Sedimenticola sp.]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr01.33 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0ACD6	Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli O157:H7 OX=83334 GN=iscU PE=1 SV=1
P0ACD5	Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=iscU PE=3 SV=1
P0ACD4	Iron-sulfur cluster assembly scaffold protein IscU OS=Escherichia coli (strain K12) OX=83333 GN=iscU PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007703 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01592 all species →	NifU_N	NifU-like N terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002871 all species →	Domain	NIF system FeS cluster assembly, NifU, N-terminal	Interproscan
IPR011339 all species →	Family	Iron-sulfur cluster assembly scaffold protein IscU	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10093 all species →	IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04488	iscU, nifU; nitrogen fixation protein NifU and related proteins	-	Energy metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.