Detailed information of evm.model.Chr01.4157 in Hemicorallium imperiale

Genomic Location: Chr01:82117724...82258420
NR annotation: CAB3982732.1, cullin-3 isoform X2 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.4157 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DE95Cullin-3-A OS=Xenopus laevis OX=8355 GN=cul3a PE=1 SV=1
Q6GPF3Cullin-3-B OS=Xenopus laevis OX=8355 GN=cul3b PE=1 SV=1
B5DF89Cullin-3 OS=Rattus norvegicus OX=10116 GN=Cul3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000557 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 adaptor Cullin RING|Cullin · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00888
all species →		CullinCullin familyRepeatInterproscan
PF10557
all species →		Cullin_Nedd8Cullin protein neddylation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019559
all species →		DomainCullin protein, neddylation domainInterproscan
IPR036317
all species →		Homologous_superfamilyCullin homology domain superfamilyInterproscan
IPR001373
all species →		DomainCullin, N-terminalInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR016159
all species →		Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan
IPR016158
all species →		DomainCullin homology domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR045093
all species →		FamilyCullinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11932
all species →		CULLINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031625
all species →		Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0031461
all species →		Cellular Componentcullin-RING ubiquitin ligase complexInterproscan
GO:0031463
all species →		Cellular ComponentCul3-RING ubiquitin ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr01.4157.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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