Detailed information of evm.model.Chr01.5239 in Hemicorallium imperiale

Genomic Location: Chr01:106386047...106414131
NR annotation: CAB3994387.1, histidine decarboxylase [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q7X8D4Serine decarboxylase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os04g04640 PE=3 SV=2
Q9MA74Serine decarboxylase OS=Arabidopsis thaliana OX=3702 GN=SDC PE=1 SV=1
Q6ESZ9Serine decarboxylase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SDC1 PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00282Pyridoxal_deCPyridoxal-dependent decarboxylase conserved domainDomainInterproscan
PF13613HTH_Tnp_4Helix-turn-helix of DDE superfamily endonucleaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR002129FamilyPyridoxal phosphate-dependent decarboxylaseInterproscan
IPR027805DomainTransposase, Helix-turn-helix domainInterproscan
IPR051151FamilyGroup II Amino Acid DecarboxylaseInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46101-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016830Molecular Functioncarbon-carbon lyase activityInterproscan
GO:0019752Biological Processcarboxylic acid metabolic processInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan

TOP