Detailed information of evm.model.Chr01.551 in Hemicorallium imperiale

Genomic Location: Chr01:14442623...14473976
NR annotation: CAB3991982.1, Host cell factor 1 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.551 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9V4C8Host cell factor OS=Drosophila melanogaster OX=7227 GN=Hcf PE=1 SV=2
D3ZN95Host cell factor 1 OS=Rattus norvegicus OX=10116 GN=Hcfc1 PE=1 SV=1
Q61191Host cell factor 1 OS=Mus musculus OX=10090 GN=Hcfc1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004526 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01344
all species →		Kelch_1Kelch motifRepeatInterproscan
PF13418
all species →		Kelch_4Galactose oxidase, central domainRepeatInterproscan
PF13854
all species →		Kelch_5Kelch motifRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003961
all species →		DomainFibronectin type IIIInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR043536
all species →		FamilyHost cell factorInterproscan
IPR015915
all species →		Homologous_superfamilyKelch-type beta propellerInterproscan
IPR006652
all species →		RepeatKelch repeat type 1Interproscan
IPR036116
all species →		Homologous_superfamilyFibronectin type III superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46003
all species →		HOST CELL FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0035097
all species →		Cellular Componenthistone methyltransferase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr01.551.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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