Gene detail

Detailed information of evm.model.Chr01.5624 in Hemicorallium imperiale

Genomic Location: Chr01:118016654...118028193
NR annotation: XP_028401543.1, short coiled-coil protein B-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr01.5624 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XJK1	Short coiled-coil protein B OS=Danio rerio OX=7955 GN=scocb PE=3 SV=1
Q08BG7	Short coiled-coil protein A OS=Danio rerio OX=7955 GN=scoca PE=3 SV=1
Q5RJZ6	Short coiled-coil protein OS=Rattus norvegicus OX=10116 GN=Scoc PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10224 all species →	DUF2205	Short coiled-coil protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019357 all species →	Family	Short coiled-coil protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21614 all species →	SHORT COILED COIL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20316	SCOC; short coiled-coil protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.