Detailed information of evm.model.Chr01.5826 in Hemicorallium imperiale

Genomic Location: Chr01:122544580...122562407
NR annotation: XP_046852172.1, serine--tRNA ligase, cytoplasmic-like [Xenia sp. Carnegie-2017]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.5826 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P26636Serine--tRNA ligase, cytoplasmic OS=Cricetulus griseus OX=10029 GN=SARS1 PE=2 SV=2
Q6P799Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Sars1 PE=1 SV=3
P13642Serine--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=SARS1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003530 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02403
all species →		Seryl_tRNA_NSeryl-tRNA synthetase N-terminal domainDomainInterproscan
PF00587
all species →		tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002317
all species →		FamilySerine-tRNA ligase, type1Interproscan
IPR010978
all species →		Homologous_superfamilyClass I and II aminoacyl-tRNA synthetase, tRNA-binding armInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR015866
all species →		DomainSerine-tRNA synthetase, type1, N-terminalInterproscan
IPR033729
all species →		DomainSerine-tRNA ligase catalytic core domainInterproscan
IPR002314
all species →		DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR042103
all species →		Homologous_superfamilySerine-tRNA synthetase, type1, N-terminal domain superfamilyInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11778
all species →		SERYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004828
all species →		Molecular Functionserine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006434
all species →		Biological Processseryl-tRNA aminoacylationInterproscan
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01875SARS, serS; seryl-tRNA synthetaseEC:6.1.1.11
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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