Detailed information of evm.model.Chr01.5955 in Hemicorallium imperiale

Genomic Location: Chr01:125769266...125862424
NR annotation: XP_028401544.1, protein FORGETTER 1-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.5955 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
F4IF36Protein FORGETTER 1 OS=Arabidopsis thaliana OX=3702 GN=FGT1 PE=1 SV=1
Q5BJL5Protein strawberry notch homolog 1 OS=Rattus norvegicus OX=10116 GN=Sbno1 PE=1 SV=2
Q689Z5Protein strawberry notch homolog 1 OS=Mus musculus OX=10090 GN=Sbno1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000611 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13871
all species →		Helicase_C_4C-terminal domain on Strawberry notch homologueDomainInterproscan
PF13872
all species →		AAA_34P-loop containing NTP hydrolase pore-1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026937
all species →		DomainStrawberry notch, helicase C domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR026741
all species →		FamilyProtein strawberry notchInterproscan
IPR039187
all species →		DomainStrawberry notch, AAA domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12706
all species →		STRAWBERRY NOTCH-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0031490
all species →		Molecular Functionchromatin DNA bindingInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26273SBNO, SNO, FGT1; protein strawberry notch-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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