Genomic Location: Chr01:133942804...133974319
NR annotation: CAB4015740.1, E3 ubiquitin- ligase RNF130 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr01.6264 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q90YW0 | Large ribosomal subunit protein uL6 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1 |
| Q3SYR7 | Large ribosomal subunit protein uL6 OS=Bos taurus OX=9913 GN=RPL9 PE=2 SV=1 |
| P32969 | Large ribosomal subunit protein uL6 OS=Homo sapiens OX=9606 GN=RPL9 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008067 (this species only) |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00347 all species → | Ribosomal_L6 | Ribosomal protein L6 | Domain | Interproscan |
| PF13639 all species → | zf-RING_2 | Ring finger domain | Domain | Interproscan |
| PF02225 all species → | PA | PA domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR020040 all species → | Domain | Large ribosomal subunit protein uL6, alpha-beta domain | Interproscan |
| IPR046450 all species → | Homologous_superfamily | PA domain superfamily | Interproscan |
| IPR000702 all species → | Family | Large ribosomal subunit protein uL6-like | Interproscan |
| IPR036789 all species → | Homologous_superfamily | Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily | Interproscan |
| IPR003137 all species → | Domain | PA domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11655 all species → | 60S/50S RIBOSOMAL PROTEIN L6/L9 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| GO:0002181 all species → | Biological Process | cytoplasmic translation | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
evm.model.Chr01.6264.
